Separation and identification of fatty acid (FA) isomers
in biological
samples represents a challenging problem for lipid chemists. Notably,
FA regio- and stereo-isomers differing in the location or (cis/trans) geometry of carbon-carbon double bonds are often
incompletely separated and ambiguously assigned in conventional chromatography-mass
spectrometry analyses. To address this challenge, FAs have been derivatized
with the charge-switch derivatization reagents N-methyl-pyridinium-3-methanamine
and N-(4-aminomethylphenyl)pyridinium and subjected
to reversed-phase liquid chromatography-tandem mass spectrometry. Charge-remote fragmentation
of the fixed-charge derivatives leads to characteristic product ions
arising from dissociation at allylic positions that enable assignment
of position(s) of unsaturation, while a newly discovered dihydrogen
neutral loss was found to be dominant for double bonds with cis-stereochemistry. The structure of the [M - 2]+ product ions was probed by gas-phase ozonolysis revealing the presence
of two new carbon-carbon bonds on either side of the initial position
of unsaturation consistent with an electrocyclic mechanism of 1,4-dihydrogen
elimination. Charge-remote fragmentation pathways diagnostic of double
bond position and stereochemistry were found to be generalized for
FAs of different carbon-chain lengths, double bond positions, and
degrees of unsaturation and were effective in the unequivocal assignment
of the FA structure in complex mixtures of FA isomers, including bovine
milk powder.