Syrian Rue, obtained
from the seeds of the Peganum
harmala plant, is a reddish colorant especially popular
for dyeing carpets and wool fabrics in Western Asia and traditionally
used as an alternative source for the madder-derived Turkey Red dye.
The main constituents of the Syrian Rue dye are harmane, harmine,
harmaline and harmalol, which belong to a group of substances collectively
known as harmala alkaloids. These compounds are also called β-carboline
alkaloids, as they display very similar molecular structures that
consist of either a pyridine ring or a nitrogen-containing six-atom
ring with two conjugated double bonds, each fused to an indole skeleton.
In the present study, density functional theory was employed to perform
a vibrational analysis of the four constituents of Syrian Rue by means
of the Gaussian package. First, the molecular geometry of each compound
was optimized and its Raman spectrum was calculated. Then, all the
observed Raman bands were assigned to specific vibrational normal
modes of the corresponding molecule. As a final step, the FT-Raman
and surface-enhanced Raman spectroscopy (SERS) spectra of the four
structurally related alkaloids were examined and compared, with the
ultimate aim to study the adsorption mechanism of these molecules
on silver nanoparticles used as SERS substrates.