It is still contentious how the abundance and diversity of magnetofossils reflect varying paleoenvironmental conditions. Here, we apply rock magnetic methods and transmission electron microscopy to identify magnetofossils in the core MD01-2444 from the southwestern Iberian margin during the period 49. 6-18.5 ka and 193.8-171.7 ka. Results show a correlation between the biogenic magnetite component and contrasting paleoenvironmental conditions. Specifically, remanence ratio (M rs /M s ), the ratio of anhysteretic susceptibility (χ ARM ) to saturation isothermal remanant magnetization (SIRM), fractions of biogenic soft and biogenic hard components (BS + BH), and delta-delta ratio (δ FC /δ ZFC ) have a negative relationship with planktonic δ 18 O, suggesting that more magnetofossils existed in sediments during warmer periods. Combining transmission electron microscopy images with paleoenvironmental proxies, we found that the proportions of bullet-shaped magnetofossils increased in a warmer and less oxic environment, while isotropic shapes dominated in cooler and oxic environments.Plain Language Summary Magnetotactic bacteria are a group of microorganisms that produce intracellular nanometer-sized magnetite and/or greigite minerals. Those magnetic particles preserved in muds, called magnetofossils, can be served as clues of past climate change. Using rock magnetic method along with electron microscopy analysis, we found that more magnetite magnetofossils existed in muds of warmer period from a marine core of the southwestern Iberian margin during the periods 49. 6-18.5 ka and 193.8-171.7 ka. Combining with previously published results of physical and chemical analysis of the same core, we found the proportions of bullet-shaped bacterial crystals increased in the warmer and relatively anoxic periods, whereas equant ones dominated in the cooler and relatively oxic environment. Our results suggest that the abundance and crystal shape of magnetofossils are sensitive to past climate change.