Improving the proteins and amino acid contents of rice
seeds is
one of the prime objectives of plant breeders. We recently developed
an EMS mutant/high-protein mutant (HPM) of rice that exhibits 14.8%
of the total protein content as compared to its parent Dharial (wild-type),
which shows only 9.3% protein content in their mature seeds. However,
the mechanisms underlying the higher protein accumulation in these
HPM seeds remain largely elusive. Here, we utilized high-throughput
proteomics to examine the differences in the proteome profiles of
the embryo, endosperm, and bran tissues of Dharial and HPM seeds.
Utilizing a label-free quantitative proteomic and subsequent functional
analyses of the identified proteins revealed that nitrogen compound
biosynthesis, intracellular transport, protein/amino acid synthesis,
and photosynthesis-related proteins were specifically enriched in
the endosperm and bran of the high-protein mutant seed. Our data have
uncovered proteome-wide changes highlighting various functions of
metabolic pathways associated with protein accumulation in rice seeds.