3d geological visualization has a broad application prospect and value in the study of Geological Structure(GS). Therefore, this paper studies the visualization of GS based on UAV and GIS. The 3D GS model simplification and multi-resolution model are analyzed, and the GS model refinement and data dynamic scheduling are discussed; This paper briefly introduces UAV and GIS, and applies them to GS visualization for research and analysis. Based on seismic data multi attribute fusion technology, the hydrogeological database structure and 3D visualization system are processed, and then the GS visualization is effectively analyzed in detail.