Atomic force microscopy (AFM) has emerged as a powerful technique for mapping the surface morphology of biological specimens, including bacterial cells. Besides creating topographic images, AFM enables us to probe both physicochemical and mechanical properties of bacterial cell surfaces on a nanometer scale. For AFM, bacterial cells need to be firmly anchored to a substratum surface in order to withstand the friction forces from the silicon nitride tip. Different strategies for the immobilization of bacteria have been described in the literature. This paper compares AFM interaction forces obtained between Klebsiella terrigena and silicon nitride for three commonly used immobilization methods, i.e., mechanical trapping of bacteria in membrane filters, physical adsorption of negatively charged bacteria to a positively charged surface, and glutaraldehyde fixation of bacteria to the tip of the microscope. We have shown that different sample preparation techniques give rise to dissimilar interaction forces. Indeed, the physical adsorption of bacterial cells on modified substrata may promote structural rearrangements in bacterial cell surface structures, while glutaraldehyde treatment was shown to induce physicochemical and mechanical changes on bacterial cell surface properties. In general, mechanical trapping of single bacterial cells in filters appears to be the most reliable method for immobilization.During recent years, atomic force microscopy (AFM) has been increasingly used in the biosciences (5, 16). Theoretically, it combines the two most important aspects of studying structure-function relationships of biological specimens: it performs high-resolution imaging with a high signal-to-noise ratio on a molecular or submolecular scale and has the ability to operate in aqueous environments, allowing the observation of dynamic molecular events in real time and under physiological conditions. The AFM is surprisingly simple in its concept. A sharp tip located at the free end of a flexible cantilever scans over a surface. Interaction forces between the tip and the sample surface subsequently cause the cantilever to deflect. The deflection signal is acquired and digitized to provide a threedimensional image of the surface.Several biological specimens have been imaged, with lateral and vertical resolution on a nanometer and a subnanometer scale, respectively (9, 14, 23). However, when living microbial cell surfaces are imaged, the softness of the cell surface together with the high pressure over the contact area between the tip and the cell can prevent high-resolution imaging. Image contrast is indeed influenced by the probe's geometry, the imaging parameters, the surface topography, and the viscoelastic and physicochemical properties of the cell surface. Additional problems arise from friction and from lateral displacement of the organism under study, which makes immobilization strategies critical.Beyond being an imaging device, the AFM has evolved as an instrument for measuring molecular interaction forces (21,22). Bio...