Estimating variability across spatial scales has been a major issue in ecology because describing patterns in space is extremely valuable to propose specific hypotheses aim to unveil key processes behind these patterns. This paper aims to estimate the variability of the coral assemblage structure at different spatial scales in order to determine which scales explain the greatest variability onβ-diversity. For this, a fully-nested design including a series of hierarchical-random factors encompassing three spatial scales:(1) regions, (2) localities and (3) reefs sites across the Venezuelan territory. The variability among spatial scales were tested with a permutation analysis of variance (Permanova) based on Bray-Curtis index. Dispersion in species presence/absence across scales (i.e., βdiversity) was tested with a PermDisp analysis based on Jaccard's index. We found the highest variability in the coral assemblage structure between sites within locality (Pseudo-F = 5.34; p-value = 0.001, CV = 35.10%), We also found that longitude (Canonical corr = 0.867, p = 0.001) is a better predictor of the coral assemblage structure in Venezuela, rather than latitude (Canonical corr = 0.552, p = 0.021). Largest changes inβ-diversity of corals occurred within sites (F = 2.764, df1= 35, df2 = 107, p = 0.045) and within localities (F = 4.438, df1= 6, df2 = 29, p = 0.026). Our results suggest that processes operating at spatial scales of hundreds of meters and hundreds of kilometers might both be critical to shape coral assemblage structure in Venezuela, whereas smaller scales (i.e., hundreds of meters) showed to be highly-important for the species turnover component of β-diversity. This result highlights the importance of creating scale-adapted management actions in Venezuela and likely across the Caribbean region.