2020
DOI: 10.3389/fvets.2020.585730
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Sanitary Conditions Affect the Colonic Microbiome and the Colonic and Systemic Metabolome of Female Pigs

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Cited by 21 publications
(26 citation statements)
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“…All reads with unlinked rRNA genes found from the horses were mapped in KMA software 22 to genus Cellulosilyticum or Anaerocolumna and were quality filtered by CCMetagen software 23 to family Lachnospiraceae , order Clostridiales , or phylum Firmicutes , depending on their mapping qualities. Members of the Lachnospiraceae can ferment diverse plant polysaccharides to produce short-chain fatty acids 32 , and make up the largest single group in rumen microbes of cows 33 . No unlinked rRNA gene in three complete genomes of genus Anaerocolumna was found (Tables S6 , S6 _1–3).…”
Section: Resultsmentioning
confidence: 99%
“…All reads with unlinked rRNA genes found from the horses were mapped in KMA software 22 to genus Cellulosilyticum or Anaerocolumna and were quality filtered by CCMetagen software 23 to family Lachnospiraceae , order Clostridiales , or phylum Firmicutes , depending on their mapping qualities. Members of the Lachnospiraceae can ferment diverse plant polysaccharides to produce short-chain fatty acids 32 , and make up the largest single group in rumen microbes of cows 33 . No unlinked rRNA gene in three complete genomes of genus Anaerocolumna was found (Tables S6 , S6 _1–3).…”
Section: Resultsmentioning
confidence: 99%
“…Notably, in the above study, all the participants were men rather than women. In contrast, another study on female pigs rather than male also proved that sanitary conditions affected the colonic microbiome and metabolome ( te Pas et al, 2020 ). The differences of metabolic profile between pig sexes may largely contribute to the sex-related microbial compositions by sex hormones which had been confirmed to modulate gut microbiota ( Razavi et al, 2019 ).…”
Section: Discussionmentioning
confidence: 99%
“…All reads with unlinked rRNA genes found from the horses were mapped in KMA v. 1.3.0 software 19 to genus Cellulosilyticum or Anaerocolumna and were quality ltered by CCMetagen v. 1.2.2 software 20 to family Lachnospiraceae, order Clostridiales, or phylum Firmicutes, depending on their mapping qualities. Members of the Lachnospiraceae can ferment diverse plant polysaccharides to produce short-chain fatty acids 21 , and make up the largest single group in rumen microbes of cows 22 . No unlinked rRNA in three complete genomes of genus Anaerocolumna was found (Table S2).…”
Section: Unlinked Rrna Genesmentioning
confidence: 99%