bAlthough the mechanisms of action (MoA) of nonstructural protein 3 inhibitors (NS3i) and NS5B inhibitors (NS5Bi) are well understood, the MoA of cyclophilin inhibitors (CypI) and NS5A inhibitors (NS5Ai) are not fully defined. In this study, we examined whether CypI and NS5Ai interfere with hepatitis C virus (HCV) RNA synthesis of replication complexes (RCs) or with an earlier step of HCV RNA replication, the creation of double-membrane vesicles (DMVs) essential for HCV RNA replication. In contrast to NS5Bi, both CypI and NS5Ai do not block HCV RNA synthesis by way of RCs, suggesting that they exert their antiviral activity prior to the establishment of enzymatically active RCs. We found that viral replication is not a precondition for DMV formation, since the NS3-NS5B polyprotein or NS5A suffices to create DMVs. Importantly, only CypI and NS5Ai, but not NS5Bi, mir-122, or phosphatidylinositol-4 kinase III␣ (PI4KIII␣) inhibitors, prevent NS3-NS5B-mediated DMV formation. NS3-NS5B was unable to create DMVs in cyclophilin A (CypA) knockdown (KD) cells. We also found that the isomerase activity of CypA is absolutely required for DMV formation. This not only suggests that NS5A and CypA act in concert to build membranous viral factories but that CypI and NS5Ai mediate their early anti-HCV effects by preventing the formation of organelles, where HCV replication is normally initiated. This is the first investigation to examine the effect of a large panel of anti-HCV agents on DMV formation, and the results reveal that CypI and NS5Ai act at the same membranous web biogenesis step of HCV RNA replication, thus indicating a new therapeutic target of chronic hepatitis C.
Chronic hepatitis C infection affects approximately 200 million people worldwide and is a leading cause of acute and chronic liver diseases (1), and 4 million new hepatitis C virus (HCV) infections occur each year (2, 3). HCV accounts for 2/3 of liver cancer and transplant cases in the developed world (4). Until 2011, the combination of pegylated alpha interferon (IFN-␣) and ribavirin (RBV) had a success rate of ϳ80% in patients with genotypes 2 and 3 but only ϳ50% in patients with genotype 1; most importantly, it causes severe side effects (5-9). There was thus an imperative demand for the identification and development of new anti-HCV agents with diversified mechanisms of action (MoA) in order to deliver interchangeable IFN/RBV-free therapies. Remarkably, new classes of safe and efficacious inhibitors, including direct-acting antiviral (DAAs), such as nonstructural protein 3 inhibitors (NS3i), NS5Ai, and NS5Bi, as well as host-targeting antivirals (HTAs), such as cyclophilin inhibitors (CypI), mir-122 inhibitors (mir-122i), and phosphatidylinositol-4 kinase III␣ inhibitors (PI4KIII␣i), have emerged (10). A number of these compounds have reached IFN-or IFN/RBV-free clinical trials or have been approved. Interestingly, although the mechanisms of action (MoA) of NS3i and NS5Bi are well understood, the MoA of CypI and NS5Ai are not fully defined. In this study...