Medical checkup plays a role in the identification of individuals with increased cardiovascular risk. We assessed predictors of major adverse cardiovascular events (MACEs) among parameters examined during medical checkup in the general Japanese population. A total of 13,522 individuals (52.8 ± 12.3 years) who participated in our medical checkup program were enrolled and followed up for 64,748 person-years, with the endpoint of MACE. MACE included cardiovascular death, non-fatal myocardial infarction, unstable angina, decompensated heart failure, stroke, and other cardiovascular events that required hospitalization. During the follow-up, MACE occurred in 196 participants. The risk of MACE was significantly increased across the quartiles of baseline B-type natriuretic peptide (BNP) levels (logrank, P < 0.001). Multivariate Cox-hazard analysis demonstrated that male sex, age, systolic blood pressure, and BNP at baseline independently correlated with future MACE after adjustment for confounders, while the impact of BNP was the most significant among the variables investigated. These results suggest that BNP levels, obtained during medical checkup examination, is an independent and the most significant predictor of MACE. The inclusion of BNP as part of medical checkup parameters may improve the quality of screening for individuals at increased cardiovascular risk and prevent cardiovascular disease.