Our group had isolated
Bifidobacterium breve
strain BS2-PB3 from human breast milk. In this study, we sequenced the whole genome of
B. breve
BS2-PB3, and with a focus on its safety profile, various probiotic characteristics (presence of antibiotic resistance genes, virulence factors, and mobile elements) were then determined through bioinformatic analyses. The antibiotic resistance profile of
B. breve
BS2-PB3 was also evaluated. The whole genome of
B. breve
BS2-PB3 consisted of 2,268,931 base pairs with a G-C content of 58.89% and 2,108 coding regions. The average nucleotide identity and whole-genome phylogenetic analyses supported the classification of
B. breve
BS2-PB3. According to our in silico assessment,
B. breve
BS2-PB3 possesses antioxidant and immunomodulation properties in addition to various genes related to the probiotic properties of heat, cold, and acid stress, bile tolerance, and adhesion. Antibiotic susceptibility was evaluated using the Kirby-Bauer disk-diffusion test, in which the minimum inhibitory concentrations for selected antibiotics were subsequently tested using the Epsilometer test.
B. breve
BS2-PB3 only exhibited selected resistance phenotypes,
i.e.
, to mupirocin (minimum inhibitory concentration/MIC >1,024 μg/ml), sulfamethoxazole (MIC >1,024 μg/ml), and oxacillin (MIC >3 μg/ml). The resistance genes against those antibiotics,
i.e.
,
ileS
,
mupB
,
sul4
,
mecC
and
ramA
, were detected within its genome as well. While no virulence factor was detected, four insertion sequences were identified within the genome but were located away from the identified antibiotic resistance genes. In conclusion,
B. breve
BS2-PB3 demonstrated a sufficient safety profile, making it a promising candidate for further development as a potential functional food.