“…Indeed, the WAA assembly contains the highest number of conserved single-copy Arthropoda genes of any published aphid genome (Figure 1c). A taxon-annotated GC content-coverage plot (known as a "BlobPlot"; Kumar, Jones, Koutsovoulos, Clarke, & Blaxter, 2013) revealed the co-assembly of the obligate aphid bacterial symbiont Buchnera aphidicola (Baumann et al, 1995;Douglas, 1998;Hansen & Moran, 2011;Shigenobu & Wilson, 2011) and a secondary symbiont, Serratia symbiotica (Burke & Moran, 2011;Manzano-Marín & Latorre, 2016;Moran, Russell, Koga, & Fukatsu, 2005) (Supplementary Figure 1). These bacterial scaffolds were filtered from the final assembly, along with scaffolds showing atypical GC content and read coverage, leaving the final assembly free from obvious contamination (Supplementary Figure 2).…”