Virgilia divaricata is an indigenous forest margin legume growing in nutrient richer soils, but it is also known to invade the N and P poorer soils of the mature fynbos.This implies that the legume has a functional tolerance for variable soil N and P levels. It is not known how the legume utilizes inorganic N from soil and atmospheric sources under variable P supply. Moreover, very little is known about how P deficiency affects root nodule metabolic functioning of V. divaricata and their associated energy costs of N assimilation. Therefore the aim of this study was to determine whether the P deficiency affects the metabolic status of root and nodules and the consequent impact on the routes of N assimilation in a Fynbos legume, V. divaricata. Our results show that V. divaricata had a reduced biomass, plant P concentration and BNF during P deficiency. Based on the adenylates data, P stressed nodules maintained their P status better than P stressed roots. Furthermore V. divaricata was able to alter C and N metabolism in different ways in roots and nodules, in response to P stress. For both roots and nodules, this was achieved via internal cycling of P, by possible replacement of membrane phospholipids with sulpholipids and galactolipids and increased reliance on the PPi-dependant metabolism of sucrose via UDPG and to Fru-6-P. P stressed roots exported mostly ureides as organic N and recycled amino acids via deamination glutamate dehydrogenase (GDH). In contrast, P stressed nodules largely exported amino acids.Compared to roots, the nodules showed a greater degree of P conservation during low P supply, this resulted in the roots and nodules of V. divaricata, metabolising N differently during P stress, this meaning that these organs may contribute differently to the success of this plant in soils ranging from forest to fynbos.