Aims/Introduction
The incidence of type 2 diabetes is increasing worldwide. Hepatic insulin resistance and liver lipid accumulation contributes to type 2 diabetes development. The aim of the present study was to investigate the key gene pathways and co‐expression networks in the livers of type 2 diabetes patients.
Materials and Methods
Dataset
GSE
15653 containing nine healthy individuals and nine type 2 diabetes patients was downloaded from
the
National Center for Biotechnology Information Gene Expression Omnibus database. Differentially expressed genes were obtained from the livers of type 2 diabetes patients, annotated pathway enrichment and protein–protein interaction network analysis. Next, functional modules and transcription factor networks were constructed. Gene co‐expression networks were analyzed by weighted correlation network analysis to identify key modules related to clinical traits, and the candidate key genes were validated in hepatic insulin resistance models
in vitro
.
Results
A total of 778
differentially expressed genes
were filtered in the livers of type 2 diabetes patients, pathway enrichment analysis identified ke y pathways, such as the
mitogen‐activated protein kinase
signaling pathway, Hippo signaling pathway and
hypoxia‐inducible factor
‐1 signaling pathway, that were associated with type 2 diabetes. Several transcription factors of three functional modules identified from
protein–protein interaction
networks are likely to be implicated in type 2 diabetes. Furthermore,
weighted correlation network analysis
identified five modules that were shown to be highly correlated with type 2 diabetes and other clinical traits. Functional annotation showed that these modules were mainly enriched in pathways such as metabolic pathways, phosphoinositide 3‐kinase‐protein kinase B signaling pathway and natural killer cell‐mediated cytotoxicity.
UBE
2M
and
GPER
were upregulated in L02 and HepG2 models, whereas
P2
RY
11
only upregulated in L02 model, and
UBE
2N
only downregulated in HepG2 model at a significant level.
Conclusions
These results would offer new insights into hepatic insulin resistance, type 2 diabetes pathogenesis, development and drug discovery.