Exogenous prostacyclin is effective in reducing pulmonary vascular resistance in some forms of human pulmonary hypertension (PH). To explore whether endogenous prostaglandins played a similar role in pulmonary hypertension, we examined the effect of deleting cyclooxygenase (COX)-gene isoforms in a chronic hypoxia model of PH. Pulmonary hypertension, examined by direct measurement of right ventricular end systolic pressure (RVESP), right ventricular hypertrophy (n ϭ 8), and hematocrit (n ϭ 3), was induced by 3 weeks of hypobarichypoxia in wild-type and COX-knockout (KO) mice. RVESP was increased in wild-type hypoxic mice compared with normoxic controls (24.4 Ϯ 1.4 versus 13.8 Ϯ 1.9 mm Hg; n ϭ 8; p Ͻ 0.05). COX-2 KO mice showed a greater increase in RVESP following hypoxia (36.8 Ϯ 2.7 mm Hg; p Ͻ 0.05). Urinary thromboxane (TX)B 2 excretion increased following hypoxia (44.6 Ϯ 11.1 versus 14.7 Ϯ 1.8 ng/ml; n ϭ 6; p Ͻ 0.05), an effect that was exacerbated by COX-2 gene disruption (54.5 Ϯ 10.8 ng/ml; n ϭ 6). In contrast, the increase in 6-keto-prostacyclin 1␣ excretion following hypoxia was reduced by COX-2 gene disruption (29 Ϯ 3 versus 52 Ϯ 4.6 ng/ml; p Ͻ 0.01). Tail cut bleed times were lower following hypoxia, and there was evidence of intravascular thrombosis in lung vessels that was exacerbated by disruption of COX-2 and reduced by deletion of COX-1. The TXA 2 / endoperoxide receptor antagonist ifetroban (50 mg/kg/day) offset the effect of deleting the COX-2 gene, attenuating the hypoxia-induced rise in RVESP and intravascular thrombosis. COX-2 gene deletion exacerbates pulmonary hypertension, enhances sensitivity to TXA 2 , and induces intravascular thrombosis in response to hypoxia. The data provide evidence that endogenous prostaglandins modulate the pulmonary response to hypoxia.Pulmonary hypertension (PH) is characterized by an elevation in pulmonary vascular tone and a striking degree of pulmonary vascular remodeling. As a consequence, there is increased pulmonary vascular resistance and right ventricular hypertrophy that ultimately leads to right ventricular failure and death (Blumberg et al., 2002). Prostaglandins have been implicated in the pathogenesis of at least some forms of PH (Christman et al., 1992). These bioactive products are generated by the enzyme cyclooxygenase (COX