Associative conditioning ofHermissenda crassicornis has been demonstrated to result in long-term changes in the potassium currents IA and ICa2+_K+ in photoreceptor neurons in the eye and to increase mRNA levels in the eye 2-to 3-fold. mRNA isolated from Hermissenda trained with paired light and rotation stimuli was labeled with [3H]acetic anhydride, while mRNA from naive animals or from animals subjected to random light and rotation stimuli was labeled with ['4C]acetic anhydride. The labeled RNA was combined and separated by agarose gel electrophoresis. The overall size distribution of labeled mRNA was shifted to longer chain lengths in the paired group. In addition, the 3H/'4C ratios were markedly increased for 21 distinct size bands, indicating increased mRNA of specific chain lengths in the paired group. Increases in the same size bands were also observed with mRNA labeled in vivo with 32P;. This indicates that associative learning in Hermissenda results in a specific induction of a distinct set of at least 21 mRNAs, rather than in a generalized increase in synthesis of all mRNA, thus resembling in some respects a differentiation-like response.crassicornis following associative conditioning (16). Since the type B photoreceptor neurons of the eye of Hermissenda are a major putative site of storage of the learned association (16), the finding of increased mRNA closely correlated with memory acquisition implies a causal role for mRNA in learning. However, in this previous experiment we did not determine whether the increase was specific for a few RNA species, thus resembling stress-induced transcription as in the heat shock reaction, or whether all mRNAs were increased, in which case the changes could result from increased ribosome activity, increased polyadenylylation, etc. This information is crucial for understanding the nuclear or genetic changes that underlie the memory.Here we report that associative conditioning results in a marked shift in the size-distribution of mRNA toward larger chain length and that this shift is strongly correlated with memory retention. Superimposed on this change are learning-specific increases in mRNAs of several specific chain lengths.