We used 5 0 rapid amplification of cDNA ends PCR (Invitrogen, Paisley, UK) to characterize the fusion, employing reverse primers derived from sequences located downstream of known PDGFRB breakpoint locations. The resulting PCR products were cloned and sequencing revealed an in-frame mRNA fusion between full-length ETV6 exon 7, 34 bp derived from ETV6 intron 7 and a truncated PDGFRB exon 12 (Figures 1b and 2). The presence of the fusion was confirmed by RT-PCR and by amplifying and sequencing fusion point from genomic DNA (not shown).The PDGFRB sequence retained in the novel fusion is downstream of the PCR primer we had initially used, explaining why ETV6-PDGFRB was not detected. To determine if we might have missed other similar cases, we analyzed 10 cases with a t(5;12) who tested negative for ETV6-PDGFRB using primers ETV6.Ex2F (5 0 -TCAGGATGGAGGAAGACTCG-3 0 ) and PDGFRB.Ex14R (5 0 -CCCCAACAGGTTGACCACGTTCAG-3 0 ). All were negative, indicating that this variant is not common, but nevertheless we now routinely use these primers to screen t(5;12) cases.This unusual fusion in our case is reminiscent of that seen for FIP1L1-PDGFRA, for which breaks almost always fall within PDGFRA exon 12 and FIP1L1 intron-derived sequence is frequently incorporated into the mature mRNA. 6 As a consequence, the PDGFRa autoinhibitory WW-like domain is disrupted resulting in partner protein-independent activation of the kinase moiety. 7 The disruption of PDGFRb WW-like domain in our case is unexpected in view of the fact that ETV6 encodes a dimerization domain that is required for transformation by 'normal' ETV6-PDGFRB.It is notable that our case presented with advanced phase disease. The fusion retained ETV6 exons 1-7, in common with that described by Tokita et al. 3 in a case that also presented with advanced features. In contrast to the most common fusion involving ETV6 exons 1-4, these variants are predicted to encode a chimaeric protein that retains the ETV6 internal and ETS DNA-binding domains. It is possible that retention of these domains leads to a more aggressive phenotype; however, it would be premature to draw any clear conclusions from just two cases. It is noteworthy, however, that our case responded well to imatinib despite being treated in advanced phase. Good responses to imatinib have been described for FIP1L1-PDGFRA-associated CEL in transformation 8 and this may be a general feature of diseases associated with PDGFR fusions.In summary, it appears that breakpoint diversity for the ETV6-PDGFRB fusion is more common than originally reported.Screens for this fusion should employ primers capable of detecting all variants in order to provide an accurate molecular diagnosis and appropriate clinical management.