Risk assessment model and nomogram established by differentially expressed lncRNAs for early-stage lung squamous cell carcinoma

Abstract

Background: The aim of this paper is to identify the differentially expressed lncRNAs (DELs) that could serve as markers for the prognosis of early-stage (stage I-II) lung squamous cell carcinoma (SCC).Methods: lncRNAs expression data and corresponding clinical information for 395 patients with stage I-II lung SCC were obtained from The Cancer Genome Atlas (TCGA). Univariate Cox regression analysis and LASSO regression were used to screen key lncRNAs, which were then were subjected to a multivariate Cox regression analysis. Furthermore, based on the results of multivariate analysis, lncRNAs with statistical significance were utilized to establish a risk assessment model. Also, a prognostic nomogram based on the risk assessment model was built. These two tools were evaluated by receiver operating characteristic (ROC) curve. Additionally, Kaplan-Meier (KM) survival curves for potential prognostic lncRNAs and clinical factors were performed.Results: A total of 5 key lncRNAs (AC015712.4, LINC02301, AGAP11, AC099850.3, and AC008915.1) were screened to construct the risk assessment model, and the area under the ROC curves (AUC) showed the model had a general performance. The risk level of the model was identified as an independent prognostic factor for stage I-II lung SCC. A nomogram combining the lncRNA-based risk assessment model, age, and T stage was constructed to predict 3-and 5-year overall survival (OS) in patients with stage I-II lung SCC.The results of ROC and calibration curves demonstrated that the nomogram was reliable in predicting OS rate. Besides, KM survival curves showed OS time was significantly corrected with the expression of AC015712.4, age, and T stage. Conclusions:In the present study, a risk assessment model and a nomogram based on five lncRNAs were constructed to predict OS time for early-stage lung SCC, which may contribute to the management of lung SCC.

LncRNA NFYC-AS1 promotes the development of lung adenocarcinomas through autophagy, apoptosis, and MET/c-Myc oncogenic proteins

“…LncRNAs are intimately involved in the development of cancer (6)(7)(8)(9). Aberrantly expressed lncRNAs have been found to be oncogenes of various types of cancers (10)(11)(12). However, the functions of most lncRNAs remain unclear.…”

A novel endoplasmic reticulum stress-related lncRNA signature for prognosis prediction and immune response evaluation in Stomach adenocarcinoma

“…Our investigation successfully developed a prognostic model for STAD based on 9 ERS-related lncRNAs, thereby underscoring the potential clinical applicability of ERS-related lncRNAs in STAD. Among these nine lncRNAs, only AC008915.1 has been identi ed as a prognostic factor in early-stage lung squamous cell carcinoma [24], while AL590705.3 has been reported as a prognostic biomarker in both hepatocellular carcinoma (HCC) and STAD [25,26]. Additionally, AC026412.3 is considered a prognostic factor for HCC [27], whereas the remaining lncRNAs have not been reported in any cancer studies.…”

A novel endoplasmic reticulum stress-related lncRNA signature for prognosis prediction and immune response evaluation in Stomach adenocarcinoma

“…Our investigation successfully developed a prognostic model for STAD based on 9 ERS-related lncRNAs, thereby underscoring the potential clinical applicability of ERS-related lncRNAs in STAD. Among these nine lncRNAs, only AC008915.1 has been identified as a prognostic factor in early-stage lung squamous cell carcinoma [ 43 ], while AL590705.3 has been reported as a prognostic biomarker in both hepatocellular carcinoma (HCC) and STAD [ 44 , 45 ]. Additionally, AC026412.3 is considered a prognostic factor for HCC [ 46 ], whereas the remaining lncRNAs have not been reported in any cancer studies.…”