Among the NAD kinase homologs found in the Kyoto Encyclopedia of Genes and Genomes, the primary structures of only two archaeal proteins (MJ0917 of Methanococcus jannaschii and MMP1489 of Methanococcus maripaludis) are characteristic and consist of two clearly distinguishable regions, viz. a C-terminal NAD kinase region and an N-terminal inositol-1-phosphatase (Ins-1-Pase) region (see Fig. 1A). M. jannaschii and M. maripaludis are hydrogenotrophic methanogenic Archaea whose entire genomic sequences have been determined (17, 18); they are thermophilic and mesophilic Archaea growing preferably at 85 and 37°C, respectively (17, 19). Ins-1-Pase (EC 3.1.3.25) is known to dephosphorylate D-myo-inositol 1-phosphate, yielding myo-inositol, which is necessary for the synthesis of phosphatidylinositol (20).A homolog (MJ0109) of the N-terminal region of MJ0917 (MJ0917-N) exists in M. jannaschii, but not in M. maripaludis. MJ0109 comprises 252 residues and has been shown to be a bifunctional Ins-1-Pase/fructose-1,6-bisphosphatase (Fru-1,6-Pase) (21,22). Other archaeal MJ0917-N homologs (AF2372 of Archaeoglobus fulgidus and TK0787 of Thermococcus kodakaraensis) and a hyperthermophilic bacterial homolog (TM1415 of Thermotoga maritima) have also been shown to be bifunctional Ins-1-Pases/Fru-1,6-Pases (22-25). The crystal structures of MJ0109 and AF2372 have been solved (22,23).The characteristic primary structures of MJ0917 and MMP1489, as well as the presence of Ins-1-Pase (MJ0109) in M. jannaschii, raised questions about the function of both MJ0917 and MMP1489. We hypothesized that MJ0917 and MMP1489 may be novel bifunctional NADPases/NAD kinases with the potential to generate intracellular NADP ϩ and to maintain a suitable balance of NAD ϩ /NADP ϩ . To confirm this hypothesis, we chose MJ0917 and analyzed its biochemical properties.* This work was supported in part by Grant-in-aid 15780212 from the Ministry of Education, Culture, Sports, Science, and Technology of Japan and by the Program for Promotion of Basic Research Activities for Innovative Biosciences. The costs of publication of this article were defrayed in part by the payment of page charges. This article must therefore be hereby marked "advertisement" in accordance with 18 U.S.C. Section 1734 solely to indicate this fact. □ S The on-line version of this article (available at http://www.jbc.org) contains supplemental TABLES 1S and 2S. 1 To whom correspondence should be addressed. Tel.: 3767; E-mail: kmurata@kais.kyoto-u.ac.jp. 2 The abbreviations used are: NAADP ϩ , nicotinic acid-adenine dinucleotide phosphate; NADPase, NADP phosphatase; Ins-1-Pase, inositol-1-phosphatase; Fru-1,6-Pase, fructose-1,6-bisphosphatase; poly(P), inorganic polyphosphate; pNPPase, p-nitrophenylphosphatase; Fru-1,6-P 2 , fructose 1,6-bisphosphate; NMN ϩ , nicotinamide mononucleotide; NADPHase, NADPH phosphatase.