Rhodobaca barguzinensis sp. nov., a new alkaliphilic purple nonsulfur bacterium isolated from a soda lake of the Barguzin Valley (Buryat Republic, Eastern Siberia)

Boldareva, E. N.; Акимов, В. Н.; Boichenko, Vladimir A.; Stadnichuk, Igor N.; Moskalenko, A. A.; Makhneva, Z. K.; Горленко, В. М.

doi:10.1134/s0026261708020148

Cited by 38 publications

(25 citation statements)

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“…At the time of writing, the genus includes only one species, Catellibacterium nectariphilum, which was isolated from activated sludge and requires a diffusible compound from other bacterial cultures for vigorous growth (Tanaka et al, 2004). Since 2008, many novel bacteria belonging to 'Rhodobacter clade' have been isolated from various environments, such as Rhodobacter megalophilus from soil (Arunasri et al, 2008), Rhodobacter maris and Rhodobacter aestuarii from marine environments , 2009, Rhodobacter ovatus from a polluted pond , Rhodovulum kholense from mud (Anil , Rhodovulum lacipunicei (Chakravarthy et al, 2009), Paracoccus halophilus from marine sediment (Liu et al, 2008), Paracoccus aestuarii from tidal-flat sediment (Roh et al, 2009), Paracoccus saliphilus from a salt lake (Wang et al, 2009) and Rhodobaca barguzinensis from sediments of a soda lake (Boldareva et al, 2008). Their wide distribution and metabolic diversity (such as heterotrophic, phototrophic and chemically autotrophic metabolism) suggest that members of this clade may play important roles in various ecosystems, especially aquatic environments.…”

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confidence: 99%

Catellibacterium aquatile sp. nov., isolated from fresh water, and emended description of the genus Catellibacterium Tanaka et al. 2004

Liu

Jiang

et al. 2010

International Journal of Systematic and Evolutionary Microbiology

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A Gram-negative, rod-shaped, non-pigmented, non-spore-forming bacterial strain that was motile by a single polar flagellum, designated A1-9 T , was isolated from Daqing reservoir in north-east China and its taxonomic position was studied using a polyphasic approach. Strain A1-9 T was non-halophilic, strictly aerobic and heterotrophic and lacked carotenoids, internal membranes and genes for photosynthesis (puf genes). Strain A1-9 T grew at 10-40 6C (optimum, 25-30 6C) and pH 5.5-9.0 (optimum, pH 6.0-6.5) and tolerated up to 1.0 % NaCl (w/v). Neither phototrophic nor fermentative growth was observed. The predominant ubiquinone was Q-10 and the major fatty acid was C 18 : 1 v7c (70 %). The DNA G+C content was 64.4 mol% (T m ). Phylogenetic analyses based on the 16S rRNA gene sequence revealed that strain A1-9 T , together with Catellibacterium nectariphilum AST4 T , formed a deep line within the 'Rhodobacter clade' of the family Rhodobacteraceae and strain A1-9 T showed 94.2 % 16S rRNA gene sequence similarity to C. nectariphilum AST4 T . On the basis of phenotypic, chemotaxonomic and phylogenetic data, strain A1-9 T is considered to represent a novel species of the genus Catellibacterium, for which the name Catellibacterium aquatile sp. nov. is proposed. The type strain is A1-9 T (5CGMCC 1.7029 T 5NBRC 104254 T ).

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confidence: 99%

Catellibacterium aquatile sp. nov., isolated from fresh water, and emended description of the genus Catellibacterium Tanaka et al. 2004

Liu

Jiang

et al. 2010

International Journal of Systematic and Evolutionary Microbiology

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“…Anoxygenic phototrophs belonging to alpha, beta, and gamma classes of Proteobacteria were used for the study. Rhodobaca bogoriensis (strain LBB1), Rhodobaca barguzinensis (strain alga-05), Roseinatronobacter strains Dor-vul, Dor-3.5, Da, and Khil-ros, and Rhodobacterales strains Zun-kh and Chep-kr have been isolated from soda lakes as described earlier (27,28). Marine isolates SO3, SYOP2, BS110, COL2P, B09, and B11, belonging to the Roseobacter clade, Roseovarius sp.…”

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confidence: 99%

Distribution and Origin of Oxygen-Dependent and Oxygen-Independent Forms of Mg-Protoporphyrin Monomethylester Cyclase among Phototrophic Proteobacteria

Boldareva-Nuianzina

Bláhová

Sobotka

et al. 2013

Appl Environ Microbiol

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b Magnesium-protoporphyrin IX monomethylester cyclase is one of the key enzymes of the bacteriochlorophyll biosynthesis pathway. There exist two fundamentally different forms of this enzyme. The oxygen-dependent form, encoded by the gene acsF, catalyzes the formation of the bacteriochlorophyll fifth ring using oxygen, whereas the oxygen-independent form encoded by the gene bchE utilizes an oxygen atom extracted from water. The presence of acsF and bchE genes was surveyed in various phototrophic Proteobacteria using the available genomic data and newly designed degenerated primers. It was found that while the majority of purple nonsulfur bacteria contained both forms of the cyclase, the purple sulfur bacteria contained only the oxygenindependent form. All tested species of aerobic anoxygenic phototrophs contained acsF genes, but some of them also retained the bchE gene. In contrast to bchE phylogeny, the acsF phylogeny was in good agreement with 16S inferred phylogeny. Moreover, the survey of the genome data documented that the acsF gene occupies a conserved position inside the photosynthesis gene cluster, whereas the bchE location in the genome varied largely between the species. This suggests that the oxygen-dependent cyclase was recruited by purple phototrophic bacteria very early during their evolution. The primary sequence and immunochemical similarity with its cyanobacterial counterparts suggests that acsF may have been acquired by Proteobacteria via horizontal gene transfer from cyanobacteria. The acquisition of the gene allowed purple nonsulfur phototrophic bacteria to proliferate in the mildly oxygenated conditions of the Proterozoic era.

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“…4). Within these genera several bands (d6-8, d15, d17 and d18) in the DGGE and several clones from day 39 and 75 were closely related to Rhodobaca barguzinensis (Boldareva et al, 2008), Roseinatronobacter thiooxidans (Sorokin et al, 2000) and Roseinatronobacter monicus (Boldareva et al, 2007). Overall these bacteriochlorophyll a containing bacteria thrive in alkaline and/ or (hyper) saline environments.…”

Section: Dgge and Clone Library Analysismentioning

confidence: 99%

Biological treatment of refinery spent caustics under halo-alkaline conditions

Graaff

Bijmans²,

Abbas

et al. 2011

Bioresource Technology

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Rhodobaca barguzinensis sp. nov., a new alkaliphilic purple nonsulfur bacterium isolated from a soda lake of the Barguzin Valley (Buryat Republic, Eastern Siberia)

Cited by 38 publications

References 10 publications

Catellibacterium aquatile sp. nov., isolated from fresh water, and emended description of the genus Catellibacterium Tanaka et al. 2004

Catellibacterium aquatile sp. nov., isolated from fresh water, and emended description of the genus Catellibacterium Tanaka et al. 2004

Distribution and Origin of Oxygen-Dependent and Oxygen-Independent Forms of Mg-Protoporphyrin Monomethylester Cyclase among Phototrophic Proteobacteria

Biological treatment of refinery spent caustics under halo-alkaline conditions

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