Revisiting FPGA Acceleration of Molecular Dynamics Simulation with Dynamic Data Flow Behavior in High-Level Synthesis
Jason Cong,
Zhenman Fang,
Hassan Kianinejad
et al.
Abstract:Molecular dynamics (MD) simulation is one of the past decade's most important tools for enabling biology scientists and researchers to explore human health and diseases. However, due to the computation complexity of the MD algorithm, it takes weeks or even months to simulate a comparatively simple biology entity on conventional multicore processors. The critical path in molecular dynamics simulations is the force calculation between particles inside the simulated environment, which has abundant parallelism. Am… Show more
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