Review on computer-assisted biosynthetic capacities elucidation to assess metabolic interactions and communication within microbial communities

Zulfiqar, Mahnoor; Singh, Vinay; Steinbeck, Christoph; Sorokina, Maria

doi:10.1080/1040841x.2024.2306465

Cited by 1 publication

(1 citation statement)

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“…Advances in molecular biology and high-resolution analytical technologies have enabled the comprehensive investigation of plant-microbe interactions through genomics, metagenomics, transcriptomics, proteomics, and metabolomics (Diwan et al, 2022 ). These omics approaches decipher the functional and structural aspects of genes, provide insights into the entire microbial community, analyse transcript sequences, uncover protein-protein interaction networks, and unravel metabolic network modeling (Zulfiqar et al, 2024 ). Together, these findings enhance our understanding of the effects of omics on interactions between plants and microbes.…”

Section: Omics Approaches Mechanism In Beneficial Plant-microbe Inter...mentioning

confidence: 99%

Omics approaches in understanding the benefits of plant-microbe interactions

Jain,

Sarsaiya,

Singh

et al. 2024

Front. Microbiol.

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Plant-microbe interactions are pivotal for ecosystem dynamics and sustainable agriculture, and are influenced by various factors, such as host characteristics, environmental conditions, and human activities. Omics technologies, including genomics, transcriptomics, proteomics, and metabolomics, have revolutionized our understanding of these interactions. Genomics elucidates key genes, transcriptomics reveals gene expression dynamics, proteomics identifies essential proteins, and metabolomics profiles small molecules, thereby offering a holistic perspective. This review synthesizes diverse microbial-plant interactions, showcasing the application of omics in understanding mechanisms, such as nitrogen fixation, systemic resistance induction, mycorrhizal association, and pathogen-host interactions. Despite the challenges of data integration and ethical considerations, omics approaches promise advancements in precision intervention and resilient agricultural practices. Future research should address data integration challenges, enhance omics technology resolution, explore epigenomics, and understand plant-microbe dynamics under diverse conditions. In conclusion, omics technologies hold immense promise for optimizing agricultural strategies and fortifying resilient plant-microbe alliances, paving the way for sustainable agriculture and environmental stewardship.

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Section: Omics Approaches Mechanism In Beneficial Plant-microbe Inter...mentioning

confidence: 99%