Precise measurements of the proton electromagnetic form factor ratio R = µpG p E /G p M using the polarization transfer method at Jefferson Lab have revolutionized the understanding of nucleon structure by revealing the strong decrease of R with momentum transfer Q 2 for Q 2 1 GeV 2 , in strong disagreement with previous extractions of R from cross section measurements. In particular, the polarization transfer results have exposed the limits of applicability of the one-photon-exchange approximation and highlighted the role of quark orbital angular momentum in the nucleon structure. The GEp-II experiment in Jefferson Lab's Hall A measured R at four Q 2 values in the range 3.5 GeV 2 ≤ Q 2 ≤ 5.6 GeV 2 . A possible discrepancy between the originally published GEp-II results and more recent measurements at higher Q 2 motivated a new analysis of the GEp-II data. This article presents the final results of the GEp-II experiment, including details of the new analysis, an expanded description of the apparatus and an overview of theoretical progress since the original publication. The key result of the final analysis is a systematic increase in the results for R, improving the consistency of the polarization transfer data in the high-Q 2 region. This increase is the result of an improved selection of elastic events which largely removes the systematic effect of the inelastic contamination, underestimated by the original analysis. * Corresponding author: puckett@jlab.org 2