The thermal properties of rhodopsin, which set the threshold of our vision, have long been investigated, but the chemical kinetics of the thermal decay of rhodopsin has not been revealed in detail. To understand thermal decay quantitatively, we propose a kinetic model consisting of two pathways: 1) thermal isomerization of 11-cis-retinal followed by hydrolysis of Schiff base (SB) and 2) hydrolysis of SB in dark state rhodopsin followed by opsin-catalyzed isomerization of free 11-cis-retinal. We solve the kinetic model mathematically and use it to analyze kinetic data from four experiments that we designed to assay thermal decay, isomerization, hydrolysis of SB using dark state rhodopsin, and hydrolysis of SB using photoactivated rhodopsin. We apply the model to WT rhodopsin and E181Q and S186A mutants at 55°C, as well as WT rhodopsin in H 2 O and D 2 O at 59°C. The results show that the hydrogen-bonding network strongly restrains thermal isomerization but is less important in opsin and activated rhodopsin. Furthermore, the ability to obtain individual rate constants allows comparison of thermal processes under various conditions. Our kinetic model and experiments reveal two unusual energetic properties: the steep temperature dependence of the rates of thermal isomerization and SB hydrolysis in the dark state and a strong deuterium isotope effect on dark state SB hydrolysis. These findings can be applied to study pathogenic rhodopsin mutants and other visual pigments.The dim light photoreceptor rhodopsin has been extensively studied over the past few decades (1-4). Rhodopsin consists of the seven-helical transmembrane opsin apoprotein covalently bound via a protonated Schiff base (SB) 5 to a chromophore, 11-cis-retinal, which isomerizes to all-trans-retinal upon absorption of a photon (5-7). The isomerization of retinal in the sterically crowded binding site of rhodopsin triggers conformational changes in the protein, leading to the active state, metarhodopsin II (Meta II) (8, 9). Meta II then activates the G protein transducin, setting off the visual signaling cascade (10).Although rhodopsin is known to have single-photon sensitivity, more photons are required to elicit a sensation of light in humans (11). Visual sensitivity can be limited by two factors that cause aberrant, false visual signaling: discrete dark noise and constitutive activation of rhodopsin. Discrete dark noise was first observed in 1972 by Srebro and Behbehani (12), who recorded electrophysiological signals generated by thermally induced chemical changes of visual pigments. The signals were identical to those generated by single photons. Baylor and coworkers (11,(13)(14)(15) further demonstrated that discrete dark noise of rhodopsin originates from spontaneous thermal isomerization of 11-cis-retinal. On the other hand, in some rhodopsin mutants, the SB linking retinal to opsin hydrolyzes, resulting in opsin that can constitutively activate transducin, causing partial or complete saturation of the rod response and desensitizing dim light visi...