Spontaneous conversion of aspartic acid (Asp) to isoaspartic
acid
(isoAsp) is a ubiquitous modification that influences
the structure and function of proteins. This modification of Asp impacts
the stability of biotherapeutics and has been linked to the development
of neurodegenerative diseases. We explored the use of 193 nm ultraviolet
photodissociation (UVPD) to distinguish Asp and isoAsp in the protonated and deprotonated peptides. The differences
in the relative abundances of several fragment ions uniquely generated
by UVPD were used to differentiate isomeric peptide standards containing
Asp or isoAsp. These fragment ions result from the
cleavage of bonds N-terminal to Asp/isoAsp residues
in addition to the side-chain losses from Asp/isoAsp or the losses of COOH, CO2, CO, or H2O
from y-ions. Fragmentation of Asp-containing tryptic
peptides using UVPD resulted in more enhanced w/w + 1/y – 1/x ions,
while isoAsp-containing peptides yielded more enhanced y – 18/y – 45/y – 46 ions. UVPD was also used to identify an isomerized peptide
from a tryptic digest of a monoclonal antibody. Moreover, UVPD of
a protonated nontryptic peptide resulted in more enhanced y ions N- and C-terminal to isoAsp and
differences in b/y ion ratios that
were used to identify the isoAsp peptide.