Response to “Comment on ‘Construction of the landscape for multi-stable systems: Potential landscape, quasi-potential, A-type integral and beyond”’ [J. Chem. Phys. 145, 147104 (2016)]

Abstract

Erratum: "Communication: X-ray absorption spectra and core-ionization potentials within a core-valence separated coupled cluster framework" [J.

Searching for the Mechanisms of Mammalian Cellular Aging Through Underlying Gene Regulatory Networks

“…However, the Waddington landscape initially only provided a qualitative picture and lacked physical foundation and quantification (Wang, 2015). Recently, there has been significant progress in establishing the physical theory and foundation as well as the quantification of the Waddington landscape (Wang et al, 2008;Wang J. et al, 2011;Wang, 2015;Zhou and Li, 2016). A detailed comparison and critical review of various approaches was presented in (Zhou and Li, 2016).…”

“…Recently, there has been significant progress in establishing the physical theory and foundation as well as the quantification of the Waddington landscape (Wang et al, 2008;Wang J. et al, 2011;Wang, 2015;Zhou and Li, 2016). A detailed comparison and critical review of various approaches was presented in (Zhou and Li, 2016). To find the core mechanisms of the mammalian cellular aging process, we built a gene regulatory network based on the existing experimental literature (Haruta et al, 2000;Stambolic et al, 2001;Inoki et al, 2002Inoki et al, , 2003Ogawara et al, 2002;Kong, 2004;Lahav et al, 2004;Nemoto, 2004;You et al, 2006;Greer et al, 2007b;Okoshi et al, 2007;Budanov and Karin, 2008;Gwinn et al, 2008;Lan et al, 2008;Salih and Brunet, 2008;Cantó et al, 2009;Chen et al, 2010;Georgescu, 2010;Ghosh et al, 2010;Sengupta et al, 2010;Yi and Luo, 2010;Budanov, 2011;Dunlop et al, 2011;Gao et al, 2011;Kim et al, 2011;Löffler et al, 2011;Renault et al, 2011;Wang F. et al, 2011;Parmigiani et al, 2014).…”