Despite the widespread use of on‐demand hydropeaking operations for generating electricity from rivers, relatively little is known about how pulsed flows influence the behaviour of fishes. We studied the movements of bull trout by using radio telemetry in a hydropeaking reach of the upper Columbia River, near Revelstoke, British Columbia, Canada. Fifty‐seven bull trout were located every 12 h to evaluate the effects of discharge magnitude and rate of change on the: (1) odds of movement; (2) movement distances; and (3) movement direction. Twelve‐hour mean discharge magnitude had a negative effect on the odds of bull movement: for every 100 m3 s−1 increase in discharge, movement odds decreased by a factor of 0·91. Movement odds were unrelated to 12‐h discharge rate of change. Every 1 °C increase in water temperature increased movement odds by a factor of 1·27. Also, bull trout were more likely to move during the AM versus PM by a factor of 1·36. Movement distances were related to diel period, sex and fork length; however, these effects were not very strong. We found no evidence of downstream displacement during periods of high or changing river discharge. In fact, movement direction was unpredictable, which is consistent with the salmonid non‐migratory movement literature. Collectively, these findings provide insight into the biology of bull trout during an understudied seasonal life‐history period (i.e. autumn). It also informs river managers that bull trout movement can be modulated by operational water release from a dam. Copyright © 2013 John Wiley & Sons, Ltd.