“…Five genes (acr, rv2626c, rv2623, sodC, and sodA) were selected because their expression is known to be modulated when tubercle bacilli transition from exponential growth to either stationary phase or hypoxia-induced nonreplicating persistence, or to both. acr was chosen because it encodes a 16-kDa chaperonin that is up-regulated in vitro by hypoxia (13,15,25,26), during stationary phase of growth of aerated M. tuberculosis cultures (27), by addition of NO donors (14), and on ingestion of M. tuberculosis by cultured macrophages (28). Likewise, rv2626c, a gene of unknown function, was chosen because, like acr, it is up-regulated in vitro during stationary phase of growth of aerated cultures (29) and under hypoxic conditions (15,29,30).…”