Research progress on biological functions of lncRNAs in major vegetable crops

Li, Nan; Wang, Yujie; Zheng, Rong; Song, Xiaoming

doi:10.48130/vr-2022-0014

Cited by 4 publications

(5 citation statements)

References 178 publications

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“…It's reported that when plants progress into the stage of senescence, they usually initiate stress-resistant mechanism 27 . Increasing evidence suggests that lncRNAs are contribute to both biotic and abiotic stresses resistance 16 , 28 , 29 . So, many lncRNAs have been identified in human, animal, plants, and crops, and the regulatory mechanisms have been explored 20 , 30 .…”

Section: Discussionmentioning

confidence: 99%

“…Long non-coding RNAs (lncRNAs) are a class of transcripts that have more than 200 base pair and poor proteins coding potential, which were produced by RNA polymerases (Pol I, II, III, IV, and V) in plants 16 – 18 . According to their location relative to protein-coding genes, lncRNAs can be classified into antisense, intronic, promoter, and intergenic lncRNAs 19 .…”

Section: Introductionmentioning

confidence: 99%

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Long non-coding RNAs and their potential function in response to postharvest senescence of Sparassis latifolia during cold storage

Weng,

Zhang,

Wang

et al. 2024

Sci Rep

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Long non-coding RNAs (lncRNAs) have been shown to play crucial roles in response to aging processes. However, how lncRNAs regulate postharvest senescence of Sparassis latifolia (S. latifolia) with oriented polypropylene (OPP) film packing during cold storage remains unclear. In this study, we performed RNA-seq using the fruiting bodies of S. latifolia stored at 4 ℃ for 0, 8, 16 and 24 days after harvest, and profiled the lncRNA and mRNA transcriptome, respectively. In total, 1003 putative lncRNAs were identified, and there were 495, 483 and 162 differentially expressed (DE) lncRNAs, and 3680, 3941 and 1870 differentially expressed mRNAs after 8, 16 and 24 days of storage, respectively, compared to 0 day of storage. Target genes of differentially expressed lncRNAs were found to significantly associate with carbon and energy metabolism, response to abiotic stimulus, amino acid biosynthesis and metabolism, and protein synthesis and transcription. In addition, DE-lncRNA-mRNA co-expression networks in response to aging stress were also constructed. Taken together, these results confirm the regulatory role of lncRNAs in postharvest senescence of S. latifolia and will facilitate for improving preservation method.

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Section: Discussionmentioning

confidence: 99%

Section: Introductionmentioning

confidence: 99%

Long non-coding RNAs and their potential function in response to postharvest senescence of Sparassis latifolia during cold storage

Weng,

Zhang,

Wang

et al. 2024

Sci Rep

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“…A few studies have shown that overexpression of DWF4 in tobacco can enhance the resistance to different abiotic stresses, while in potatoes it can only enhance resistance to salinity . At the physiological level, DWF4 enhances plant resistance to drought, cold, salinity and high temperature, mainly attributed to the accumulation of osmotic regulatory substances and the increased activity of antioxidant enzymes. , …”

Section: Brs Regulate the Abiotic Stress Responsementioning

confidence: 99%

“…154 At the physiological level, DWF4 enhances plant resistance to drought, cold, salinity and high temperature, mainly attributed to the accumulation of osmotic regulatory substances and the increased activity of antioxidant enzymes. 155,156 In alfalfa (Medicago Sative L.), 5 μM BRs could significantly improve the germination rate, root activity, root length and antioxidant enzyme activity under salt stress, 157 as is the case with maize seedlings in response to salt stress, under which the membrane peroxidation and antioxidant enzyme activities are significantly increased by BRs, resulting in damage reduction and growth promotion. 158 Drought Stress.…”

Section: T H I S C O N T E N T Imentioning

confidence: 99%

Roles of Brossinosteroids Signaling in Biotic and Abiotic Stresses

TingShan

Xie

Zhou

et al. 2023

J. Agric. Food Chem.

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Brassinosteroids (BRs) are a group of plant-specific steroidal phytohormones, which play fundamental roles in regulating diverse aspects of the plant life cycle including plant growth, development, and stress response. Extensive studies have demonstrated that BRs signaling is involved in plant innate immunity as well as the response to environmental stimuli including extreme temperatures, saline-alkali, and drought. In addition, that the BRs signal interacts with other immune-related signals, constructing a complex signal network to regulate plant−microbe interactions and adaptation to adverse environments, has also been preliminarily explored. A timely and updated review on these progresses is of great significance for understanding BRs functions, improving the BRs regulation network and breeding disease-resistant crops, meantime with higher tolerance to abiotic stresses. Here, we mainly focus on the latest advances in the BRs signal which regulate plant defense and tolerance to abiotic and biotic stresses and then further highlight the crosstalk between the BRs signal and other immune-related or stress response pathways, with an aim to use them to improve crops by transgenic technologies.

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“…Auxin is one of the most important plant hormones that regulate plant growth and development (Cakir et al 2013 ). It is involved in the regulation of many physiological processes in plants and has important roles in cell differentiation, seed growth, lateral rhizogenesis in roots, apical dominance, and fruit development (Li et al 2016 , 2022 ; Khan et al 2024 ). Auxin response factors (ARFs) and auxin/indole-3-acetic acids (Aux/IAAs) are the two main transcription factors that are involved in auxin regulation/response (Hagen and Guilfoyle 2002 ; Li et al 2023 ).…”

Section: Introductionmentioning

confidence: 99%

Large-scale analysis of the ARF and Aux/IAA gene families in 406 horticultural and other plants

Feng,

Li,

Chen

et al. 2024

Mol Horticulture

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The auxin response factor (ARF) and auxin/indole-3-acetic acid (Aux/IAA) family of genes are central components of the auxin signaling pathway and play essential roles in plant growth and development. Their large-scale analysis and evolutionary trajectory of origin are currently not known. Here, we identified the corresponding ARF and Aux/IAA family members and performed a large-scale analysis by scanning 406 plant genomes. The results showed that the ARF and Aux/IAA gene families originated from charophytes. The ARF family sequences were more conserved than the Aux/IAA family sequences. Dispersed duplications were the common expansion mode of ARF and Aux/IAA families in bryophytes, ferns, and gymnosperms; however, whole-genome duplication was the common expansion mode of the ARF and Aux/IAA families in basal angiosperms, magnoliids, monocots, and dicots. Expression and regulatory network analyses revealed that the Arabidopsis thaliana ARF and Aux/IAA families responded to multiple hormone, biotic, and abiotic stresses. The APETALA2 and serum response factor-transcription factor gene families were commonly enriched in the upstream and downstream genes of the ARF and Aux/IAA gene families. Our study provides a comprehensive overview of the evolutionary trajectories, structural functions, expansion mechanisms, expression patterns, and regulatory networks of these two gene families.

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Research progress on biological functions of lncRNAs in major vegetable crops

Cited by 4 publications

References 178 publications

Long non-coding RNAs and their potential function in response to postharvest senescence of Sparassis latifolia during cold storage

Long non-coding RNAs and their potential function in response to postharvest senescence of Sparassis latifolia during cold storage

Roles of Brossinosteroids Signaling in Biotic and Abiotic Stresses

Large-scale analysis of the ARF and Aux/IAA gene families in 406 horticultural and other plants

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