Background: African weakly electric fish generate weakly electric organ discharges (EODs) for orientation and communication. In the mormyrid genus Campylomormyrus, waveform and duration of discharges are species-specific and elongated pulses (> 4ms) are a derived trait. Pulse duration is presumed to depend on electrocyte geometry/excitability or hormonal signaling.Tissue-specific transcriptome analyses across species with different pulse durations have revealed differential expression of genes related to electrocyte excitability. There are also point mutations in ion channel genes which relate to pulse duration. However, a comprehensive assessment of expressed Single Nucleotide Polymorphisms (SNPs) throughout the entire transcriptomes of African weakly electric fish, with the potential to identify further genes influencing EOD duration, is still lacking. This is of particular value, as discharge duration is likely based on multiple cellular mechanisms and various genes. Here, we want to identify non-synonymous SNPs in transcriptomes of Campylomormyrus species differing by EOD duration.
Results: We identified 27 candidate genes with inferred positive selection among Campylomormyrus species and at least one non-synonymous substitution specific to Campylomormyrus tshokwe, a species with elongated EODs. Inferred candidate genes had mainly functions linked to transcriptional regulation, cell proliferation, cell differentiation and apoptosis. Further, we identified 27 GO terms and 2 KEGG categories ('Transcription' and 'Cancer: Specific types') for which C. tshokwe (derived elongated EOD) significantly more frequently exhibited a species-specific expressed substitution than C. compressirostris (ancestral short EOD).
Conclusion: We performed the first transcriptome-wide SNP analysis among weakly electric fish species (genus Campylomormyrus) and provide putative candidate genes and cellular mechanisms potentially involved in the determination of an elongated discharge in C. tshokwe. Most likely, transcriptional regulation as well cell proliferation, cell differentiation and apoptosis take part in the determination of pulse durations. The processes of cell growth and density are pivotal for tissue morphogenesis and might determine the shape of electric organs. This supports the observed correlation between cell geometry/tissue structure of the electric organ and discharge duration. The inferred expressed SNPs putatively related to EOD duration are a valuable resource for future investigations on this peculiar trait, which may focus on their functional implications.