Virus-induced gene silencing (VIGS) is a widely used, powerful technique for reverse genetics. VIGS vectors derived from the Tobacco rattle virus (TRV) are among the most popular for VIGS. We have developed a TRV RNA2 vector that allows the insertion of gene silencing fragments by ligation-independent cloning (LIC). This new vector has several advantages over previous vectors, particularly for applications involving the analysis of large numbers of sequences, since TRV-LIC vectors containing the desired insert are obtained with 100% efficiency. Importantly, this vector allows the high-throughput cloning of silencing fragments without the use of costly enzymes required for recombination, as is the case with GATEWAY-based vectors. We generated a collection of silencing vectors based on 400 tomato (Solanum lycopersicum) expressed sequence tags in this TRV-LIC background. We have used this vector to identify roles for SlMADS1 and its Nicotiana benthamiana homologs, NbMADS4-1 and -2 in flowering. We find that NbMADS4-1 and -2 act nonredundantly in floral development and silencing of either gene results in loss of organ identity. This TRV-LIC vector should be a valuable resource to the plant community.The last decade has seen an explosion in the availability of plant gene sequences. The genomes of the model species Arabidopsis (Arabidopsis thaliana) and rice (Oryza sativa) have both been sequenced, while those of tomato (Solanum lycopersicum) and maize (Zea mays) are currently being sequenced (Mueller et al., 2005; http://www.sgn.cornell.edu/about/tomato_project/; http://www.maizesequence.org/index.html). Large collections of ESTs have also been generated for a variety of species that are widely used for research purposes. Concomitant with the availability of this sequence information, many important aspects of plant growth and development have been analyzed by DNA microarrays, leading to the identification of numerous genes potentially involved in these processes. At this time then, the challenge to most plant biologists is to effectively mine this data to identify and characterize the genes and gene products that are critical to the crucial processes that have been investigated. This calls for techniques that start with a known DNA sequence and allow the determination of biological function. This approach is called reverse genetics and some of the most common methods for performing reverse genetic studies are based on RNA silencing.Although recently discovered, RNA silencing is a wellcharacterized, endogenous system for monitoring RNA inside a cell and eliminating foreign molecules or inhibiting mRNA translation (for review, see Brodersen and Voinnet, 2006). It is a homology-based process that uses small RNA fragments to identify targets for destruction or inhibition. RNA silencing is also indispensable for normal plant growth and development, regulating the expression of central genes in flowering, meristem identity, and other processes (Meins et al., 2005). In plants, RNA silencing plays critical roles in viral ...