“…ML765, ML627, and ML766, used to quantify env transcripts are specific for HTLV-1 exon 1/exon 2 (terminal exon for env) junctions utilizing splice acceptor sites at nt 4501, nt 4641, and nt 4658, respectively and ML628, ML764, and ML760, specific for HTLV-1 p13, HBZ minor spliced transcript, and gag/pol unspliced transcript, respectively, were generated by PCR amplification followed by insertion into pCRScript (Stratagene, La Jolla, CA): ML765, partial exon 1 (nt 103-119) fused to exon 2 (nt 4501-4831) and partial intron 2 (nt 4832-4919); ML627, partial exon 1 (nt 100-119) fused to exon 2 (nt 4641-4831) and partial intron 2 (nt 4832-4919); ML766, partial exon 1 (nt 103-119) fused to exon 2 (nt 4658-4831) and partial intron 2 (nt 4832-4919); ML628, partial exon 1 (nt 102-119) fused to partial exon 3 (nt 6875-7170); ML764 (numbering is based on ACH antisense strand proviral sequence beginning with the last nt of U5 of the 3′ LTR), exon 1 (nt 212-225) fused to partial exon 2 (nt 1765-1826); ML760, nt 920-1049. IY531, and IY595 (Younis et al, 2004) were used to quantify HTLV-2 tax/rex and env mRNAs, respectively. ML637, ML638, ML674 and ML761, specific for HTLV-2 p28, p22/p20rex-1, p28, p22/p20rex-2, p10/p11 and gag/pol transcripts, respectively were generated by PCR amplification of fragments across the appropriate splice junction followed by insertion into pCRScript (Stratagene, La Jolla, CA): ML637, partial exon 1 (nt 117-135) fused to partial terminal exon (nt 6630-6984); ML638, partial exon 1 (nt 117-135) fused to partial exon 3 (nt 6900-6984); ML674, partial exon 1 (nt 123-135) fused to exon 2 (nt 4730-4869) fused to partial terminal exon (nt 6493-6508); ML675, partial exon 1 (nt 123-135) fused to exon 2 (nt 4730-4869) fused to partial terminal exon (nt 6630-6645); ML761, nt 1887-1986. pBluescripthGAPDH was a gift from K. Boris-Lawrie (Ohio State University, Columbus, OH).…”