This article is available online at http://www.jlr.org Supplementary key words fatty acid desaturase • isolated population • genetic association Several changes in diet over the past century are hypothesized to have been maladaptive, thereby leading to an increase in the incidence of numerous chronic diseases in developed countries ( 1, 2 ). Many of these diseases (obesity, diabetes, asthma, allergies, arthritis and chronic joint disease, dementia, and cardiovascular disease) have a substantial infl ammatory component ( 3-6 ) with notable cooccurrences ( 7,8 ). Perhaps no changes in the modern diet have had a greater impact than the quantitative and qualitative changes in fat consumption. While the percentage of energy from fat ( ف 35%) is thought to be similar in ancestral and contemporary Western diets, the concentrations and ratios of the types of fat that humans eat ( 9, 10 ) have shifted, with marked increases in saturated and omega-6 ( 6) fatty acid consumption. Importantly, these changes have been suggested to alter human health and the incidence of chronic infl ammatory diseases ( 11-13 ).Long-chain serum polyunsaturated fatty acids (LC-PUFA; у 20 carbons), such as arachidonic acid (AA; C20:4 6), and their metabolic products orchestrate several critical events in immunity and infl ammation.Abstract Long-chain polyunsaturated fatty acids (PUFA) orchestrate immunity and infl ammation through their capacity to be converted to potent infl ammatory mediators. We assessed associations of FADS gene cluster polymorphisms and fasting serum PUFA concentrations in a fully ascertained, geographically isolated founder population of European descent. Concentrations of 22 PUFAs were determined by gas chromatography, of which ten fatty acids and fi ve ratios defi ning FADS1 and FADS2 activity were tested for genetic association against 16 single nucleotide polymorphisms (SNP) in 224 individuals. A cluster of SNPs in tight linkage disequilibrium in the FADS1 gene (rs174537, rs174545, rs174546, rs174553, rs174556, rs174561, rs174568, and rs99780) were strongly associated with arachidonic acid (AA) ( P = 5.8 × 10؊ 7 -1.7 × 10 ؊ 8 ) among other PUFAs, but the strongest associations were with the ratio measuring FADS1 activity in the -6 series ( P = 2.11 × 10 ؊ 13 -1.8 × 10 ؊ 20 ). The minor allele across all SNPs was consistently associated with decreased -6 PUFAs, with the exception of dihomo-␥ -linoleic acid (DHGLA), where the minor allele was consistently associated with increased levels. Our fi ndings in a geographically isolated population with a homogenous dietary environment suggest that variants in the ⌬ -5 desaturase enzymatic step likely regulate the effi ciency of conversion of medium-chain PUFAs to potentially infl ammatory PUFAs, such as AA. -Mathias, R. A., C. Vergara, L. Gao, N. Rafaels, T. Hand, M. Campbell, C. Bickel, P. Ivester, S. Sergeant, K. C. Barnes, and F. H. Chilton. FADS genetic variants and -6 polyunsaturated fatty acid metabolism in a homogeneous island population.