How distal transcriptional enhancer sequences interact with proximal promoters is poorly understood within the context of chromatin. In this report, we have used the immunoglobulin heavy chain locus to address the role of the PTIP protein in transcription regulation and class switch recombination in B cells, a process that depends on regulated transcription and DNA recombination via Pax5 and distal 3 enhancer sequences. We first show that PTIP is recruited to a Pax5 binding site to promote histone H3 lysine 4 (H3K4) methylation. Using a CD19-Cre driver strain, we deleted PTIP in mature B cells. Loss of PTIP inhibited class switch recombination by suppressing transcription and histone H3K4 methylation at the germ line transcript promoters. In the absence of PTIP, Pax5 binding to the promoter regions is reduced and long-range chromatin interactions between the distal enhancer at the 3 regulatory region and the germ line transcript promoters are not detected. We propose a model whereby PTIP stabilizes the Pax5 DNA interactions that promote chromatin looping and regulate transcriptional responses needed for class switch recombination.Long-range interactions between distal enhancers and promoters are known to regulate many multigene loci through DNA looping mechanisms that bring enhancer sequences and their respective binding proteins close to a transcription start site (14,18,27). The immunoglobulin heavy chain locus (IgH) is an example of a large locus with multiple transcripts, splice variants, regulatory elements, and genomic rearrangements that can produce different proteins in response to a variety of signaling inputs. In B lymphocytes, class switch recombination (CSR) rearranges the immunoglobulin heavy chain (IgH) locus such that new constant regions replace the IgM isotype (35). In response to specific stimuli, CSR requires the initiation of germ line transcripts (GLTs) upstream of the new constant region, before double-strand break formation and recombination. B cell differentiation and IgH transcription depend on the 3Ј enhancer sequences (12), which are known to interact with the switch regions through a chromatin looping mechanism (17).The Pax5 gene, a member of the paired-box (Pax) gene family first identified as homologues of the Drosophila melanogaster paired and gooseberry segmentation genes, encodes a protein that is essential for B cell specification and immunoglobulin gene expression (8). Genetic loss-of-function experiments in mice provide strong evidence that Pax5 is necessary not only for the transition from pre-B cell to IgM-positive B cells (36) but also for the maintenance of B cell phenotypic stability (24) and for isotype switching and generation of Igsecreting B cells (15). Within the IgH locus, Pax5 binds to the 3Ј enhancer (23), although how Pax5 contributes to chromatin looping and GLT regulation is unclear. Pax5 is a member of the Pax2/5/8 subfamily, whose amino-terminal DNA binding domains are virtually identical and whose carboxy-terminal sequences share large regions of identity (2...