Class A amphipathic helical peptides have been shown to mimic apolipoprotein A-I, the major protein component of high density lipoproteins and have been shown to inhibit atherosclerosis in several dyslipidemic mouse models. Previously we reported the NMR structure of Ac-18A-NH 2 , the base-line model class A amphipathic helical peptide in a 50% (v/v) trifluoroethanol-d 3 /water mixture, a membrane-mimic environment (Mishra, V. K., Palgunachari, M. N., Anantharamaiah, G. M., Jones, M. K., Segrest, J. P., and Krishna, N. R. (2001) Peptides 22, 567-573). The peptide Ac-18A-NH 2 forms discoidal nascent high density lipoprotein-like particles with 1,2-dimyristoyl-sn-glycero-3-phosphocholine. Because subtle structural changes in the peptide⅐lipid complexes have been shown to be responsible for their antiatherogenic properties, we undertook high resolution NMR studies to deduce detailed structure of recombinant peptide⅐1,2-dimyristoyl-sn-glycero-3-phosphocholine complexes. The peptide adopts a well defined amphipathic ␣ helical structure in association with the lipid at a 1:1 peptide:lipid weight ratio. Nuclear Overhauser effect spectroscopy revealed a number of intermolecular close contacts between the aromatic residues in the hydrophobic face of the helix and the lipid acyl chain protons. The pattern of observed peptide-lipid nuclear Overhauser effects is consistent with a parallel orientation of the amphipathic ␣ helix, with respect to the plane of the lipid bilayer, on the edge of the disc (the belt model). Based on the results of chemical cross-linking and molecular modeling, we propose that peptide helices are arranged in a head to tail fashion to cover the edge of the disc. This arrangement of peptides is also consistent with the pK a values of the Lys residues determined previously. Taken together, these results provide for the first time a high resolution structural view of the peptide⅐lipid discoidal complexes formed by a class A amphipathic ␣ helical peptide.Lipoproteins are macromolecular complexes of lipids and proteins (apolipoproteins) that serve to transport lipids and lipid-soluble and water-insoluble molecules in blood throughout the body. Epidemiological studies have established an inverse correlation between the plasma levels of high density lipoprotein (HDL) 4 cholesterol and the risk of coronary artery disease. In support of a protective role of human apolipoprotein A-I (apoA-I), the major protein accounting for 70% of the total protein present in HDL, it has been shown that expression of human apoA-I in atherosclerosis-sensitive mouse models leads to inhibition of atherosclerosis (1-4). In addition, recently it has been shown that infusion of recombinant HDL particles consisting of apoA-I Milano regressed already existing lesions in humans (5). Therefore, there is a great deal of interest in understanding structurefunction relationships of HDLs.The common lipid-associating motif identified in apoA-I and other exchangeable apolipoproteins is the amphipathic ␣ helix with opposing polar and apolar...