The rat brain-derived neurotropic factor (BDNF) gene consists of four S' exons lnked to separate promoters and one 3' exon encoding the prepro-BDNF protein.To gain sights Into the regulation ofBDNF mRNA expression, probes specific for the different 5' exons were used to study the expresson of BDNF mRNA in the brain. Following a systemic isjection ofthe glutamate analog kainc acid, exon I, HI, and m1 mRNAs increased tanendtly in hippocampus and cerebral cortex. A modest incrase was seen for exon IV, where a new transcription initiation site was induced by this treatment. Pretreatments with the N-methyl-D-aspartate (NMDA) receptor antagnist MK801 or the a-amino-3-hydroxy-5-methyl-4-isoxazoleproplonic acid (AMPA) receptor antagonis 2,3-dihydroxy-6-nitrosulfanoylbenzo(f)quinoxaline revealed two region-spcfic patterns of glutamate receptor-mediated regulation. The first pattern found in neocortex, prform cortex, and amygdala involves regulation of BDNF exon I, UI, and m mRNAs trgh NMDA and AMPA/kainate receptors. The second pattern found In the hippocampus involves regulation of BDNF exon I, U, and HI mRNAs by hig-afnity kainate or metabotropic receptors. Treatment with the -aminobutyric acid subtpe A (GABAA) receptor antagonst bicu e incrased exon I and UI mRNAs in the dentate gyms, and the muscinic receptor agonist plocarpine incasd exon I mRNA mainly in the neocortex. These data show that the four BDNF promoters allow multiple points of BDNF mRNA regulation and suggest that the activation of different subtpes of glutmate receptors differentially regulates the expon of BDNF exon-spech'ic mRNAs In the brain.Brain-derived neurotrophic factor (BDNF; refs. 1 and 2) is a member of the neurotrophin family, which also includes nerve growth factor (NGF) (3), neurotrophin-3 (NT-3) (4-9), and neurotrophin 4/5 (NT-4) (10-12). BDNF promotes the survival of retinal ganglion cells (13) Abbreviations: NGF, nerve growth factor; BDNF, brain-derived neurotrophic factor; NT-3, neurotrophin 3; NT-4, neurotrophin 4; NMDA, N-methyl-D-aspartate; AMPA, a-amino-3-hydroxy-5-methyl-4isoxazolepropionic acid; GABA, 't-aminobutyric acid; KA, kainic acid; NBQX, 2,3-dihydroxy-6nitrosulfanoylbenzo(f)quinoxaline; CNQX, 6-cyano-7-nitroquinoxaline-2,3-dione.