2024
DOI: 10.1101/2024.01.25.577263
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Refining Spatial Proteomics by Mass Spectrometry: An Efficient Workflow Tailored for Archival Tissue

Rune Daucke,
Charlotte V. Rift,
Nicolai S. Bager
et al.

Abstract: Formalin-fixed paraffin-embedded (FFPE) tissue, while excellent for preserving tissue for extended periods of time, poses a challenge when extracting molecular information. We therefore developed an easily adaptable and highly efficient workflow for extracting high levels of proteins from low-input material. We compared sensitivity between two stains, EpCAM and H&E, across material inputs of ~2 and 1,600 cells. In the context of EpCAM-stained tissue, our investigations unveiled a range from ~1,200 unique p… Show more

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