2019
DOI: 10.1021/acs.jproteome.9b00018
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Red Blood Cell Metabolic Responses to Torpor and Arousal in the Hibernator Arctic Ground Squirrel

Abstract: Arctic ground squirrels provide a unique model to investigate metabolic responses to hibernation in mammals. During winter months these rodents are exposed to severe hypothermia, prolonged fasting, and hypoxemia. In the light of their role in oxygen transport/off-loading and owing to the absence of nuclei and organelles (and thus de novo protein synthesis capacity), mature red blood cells have evolved metabolic programs to counteract physiological or pathological hypoxemia. However, red blood cell metabolism i… Show more

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Cited by 40 publications
(55 citation statements)
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References 120 publications
(207 reference statements)
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“…Plasma samples (20 µL) were extracted using ice cold methanol:acetonitrile:water (5:3:2) at 1:25 dilution as previously described 71 . Extracts were analyzed on a Thermo Vanquish ultra-high performance liquid chromatograph (UHPLC) coupled online to a Thermo Q Exactive mass spectrometer using a 5 min C18 gradient method in positive and negative modes as described previously 72 , 73 . Peak picking and metabolite assignment were performed using Maven (Princeton University) against the KEGG database 74 76 , confirmed against chemical formula determination from isotopic patterns and accurate mass, and validated against experimental retention times for > 650 standard compounds (Sigma Aldrich; MLSMS, IROATech, Bolton, MA, USA) 77 .…”
Section: Methodsmentioning
confidence: 99%
“…Plasma samples (20 µL) were extracted using ice cold methanol:acetonitrile:water (5:3:2) at 1:25 dilution as previously described 71 . Extracts were analyzed on a Thermo Vanquish ultra-high performance liquid chromatograph (UHPLC) coupled online to a Thermo Q Exactive mass spectrometer using a 5 min C18 gradient method in positive and negative modes as described previously 72 , 73 . Peak picking and metabolite assignment were performed using Maven (Princeton University) against the KEGG database 74 76 , confirmed against chemical formula determination from isotopic patterns and accurate mass, and validated against experimental retention times for > 650 standard compounds (Sigma Aldrich; MLSMS, IROATech, Bolton, MA, USA) 77 .…”
Section: Methodsmentioning
confidence: 99%
“…Serum samples were thawed on ice, then 20 µL of each was extracted with 480 µL of ice-cold lysis/extraction buffer (5:3:2 methanol:acetonitrile:water) containing 2.5 µM of stable isotope-labeled amino acid mix (Cambridge Isotope Laboratories, cat no MSK-A2-1.2) and a mix of acylcarnitines (Cambridge Isotope Laboratories, NSK-B-1) diluted 1 to 200 to serve as standards. Samples were extracted and analyzed on a Vanquish ultra-High Performance Liquid Chromatography Work (UHPLC) coupled online to a Q Exactive mass spectrometer (Thermo Scientific) using a high throughput 5 min C18 gradient in positive and negative ion modes (separate runs) [ 13 ]. All samples were analyzed in one batch.…”
Section: Methodsmentioning
confidence: 99%
“…Supernatants (10 uL) were analyzed on a Thermo Vanquish ultra-high performance liquid chromatography column coupled online to a Thermo Q Exactive mass spectrometer (UHPLC-MS) in positive and negative ion modes (separate runs) using a 5 min C18 gradient. Untargeted data acquisition, quality control, and targeted data analysis were performed as previously described (36). Precipitated protein was reconstituted in PBS and measured using BCA protein assay (Pierce, Thermo Fisher, Waltham, MA).…”
Section: Metabolomicsmentioning
confidence: 99%