Many successful stories
in enzyme engineering are based on the
creation of randomized diversity in large mutant libraries, containing
millions to billions of enzyme variants. Methods that enabled their
evaluation with high throughput are dominated by spectroscopic techniques
due to their high speed and sensitivity. A large proportion of studies
relies on fluorogenic substrates that mimic the chemical properties
of the target or coupled enzymatic assays with an optical read-out
that assesses the desired catalytic efficiency indirectly. The most
reliable hits, however, are achieved by screening for conversions
of the starting material to the desired product. For this purpose,
functional group assays offer a general approach to achieve a fast,
optical read-out. They use the chemoselectivity, differences in electronic
and steric properties of various functional groups, to reduce the
number of false-positive results and the analytical noise stemming
from enzymatic background activities. This review summarizes the developments
and use of functional group probes for chemoselective derivatizations,
with a clear focus on screening for enzymatic activity in protein
engineering.