Clones for rat hepatic lipase were isolated by probing a rat liver cDNA library in Agtll with an oligonucleotide synthesized on the basis of a partial peptide sequence. The cloned messenger codes for a protein of 472 amino acids plus a hydrophobic leader sequence of 22 amino acids. The unglycosylated protein has a predicted molecular weight of 53,222 and contains two potential sites for N-glycosylation. The protein bears striking regions of homology with other known lipases and contains peptide sequences that have been implicated in lipid binding. The homologous mRNA is present in liver tissue but no detectable mRNA is observed in the adrenal gland, despite the reported presence of hepatic lipase in both the liver and the adrenal gland. No mRNA was seen in any of a variety of other tissues.Hepatic lipase, localized primarily on the sinusoidal surfaces of the liver, functions in the metabolism of circulating lipoproteins (1). Hepatic lipase activity has also been detected in several extrahepatic tissues, including adrenal gland and ovary (2-4). The presumed function of the enzyme is the hydrolysis of triglycerides in intermediate density lipoproteins (IDL) and of phospholipids in high density lipoproteins (HDL2) (5). The capacity ofpurified hepatic lipase to catalyze hydrolysis of phospholipids and mono-, di-, and triglycerides (6, 7) is consistent with the putative function. The action of hepatic lipase on HDL2 is presumed to result in the production of HDL3. Also, hepatic lipase may participate in the clearance of circulating very low-density lipoproteins (8) and chylomicron remnants (9).Hepatic lipase from rat liver has been purified to homogeneity (7, 10). The enzyme has an apparent molecular weight of53,000 (7,11) cDNA Screening and Analysis. Partial amino acid sequences were determined from the digestion of purified hepatic lipase with subtilisin (11). A single 42-base oligonucleotide probe was constructed on the basis of a 14 amino acid sequence ( Fig. 1) and codon usage tables for mammalian genes (13). In addition to codon usage assumption, G-T base pairing was allowed in designing the probe. A total of 9 x 105 plaques were screened with the end-labeled 42-base oligonucleotide probe. Plaque replicas on nitrocellulose filters were made by the method of Benton and Davis (14). The filters were baked at 80'C for 2 hr and incubated for 3 hr at 370C in 30% (vol/vol) formamide/900 mM NaCl/90 mM trisodium citrate/5 x concentrated Denhardt's solution/50 mM sodium phosphate, pH 6.5, containing salmon sperm DNA at 100 pkg/ml, in a total volume of 200 ml. The 32P-labeled probe (2 x 108 cpm/Ag) was hybridized to the filters for 17 hr at 370C in 200 ml of the same solution. The filters were washed twice at room temperature in 500 ml of 150 mM NaCl/15 mM trisodium citrate/0.1% NaDodSO4 for 30 min per wash, and then six times at 370C in 300 ml of the same solution for 30 min per wash. The filters were exposed to Du Pont Cronex 4 film with Du Pont Hi-Plus intensifying screens at -70'C for 20 hr. DNA from clones t...