Undesired side products of DNA transfections are usually discarded. However, here, we show that such products may provide insight into mutational events that are also a major driving force in protein evolution. While studying the small heat-shock protein ␣A-crystallin, we transfected the hamster ␣A-crystallin gene into a mouse muscle cell line. One of the stable transfected cell lines expressed, in addition to the expected normal ␣A-and alternatively spliced ␣A inscrystallins, two slightly larger, immunologically crossreacting proteins. These proteins were found to be encoded by a mutant ␣A-crystallin gene with a large intragenic duplication, arisen by illegitimate recombination at two CCCAT homologies, Ϸ1.8 kilobases apart in the normal hamster ␣A-crystallin gene. As a consequence, a tandem-duplicated exon 3 sequence is present in the mature mRNA of this gene, resulting in a 41-residue repeat in the translated proteins. Cells expressing the elongated ␣A-crystallins have normal growth characteristics and the usual diffuse cytoplasmic distribution of immunoreactive ␣A-crystallin. Size-exclusion chromatography of cell extracts indicated that the mutant proteins are readily incorporated into the normal large watersoluble ␣A-crystallin complexes, showing that the insert does not disturb the integrity of these complexes. This viable ␣A-crystallin mutant thus mimics the origins and effects of exon duplication, which is a common consequence of exon shuff ling in mammalian genome evolution.