To better define the regulatory role of the F 1 -ATPase ␣-subunit in the catalytic cycle of the ATP synthase complex, we isolated suppressors of mutations occurring in ATP1, the gene for the ␣-subunit in Saccharomyces cerevisiae. First, two atp1 mutations (atp1-1 and atp1-2) were characterized that prevent the growth of yeast on non-fermentable carbon sources. Both mutants contained full-length F 1 ␣-subunit proteins in mitochondria, but in lower amounts than that in the parental strain. Both mutants exhibited barely measurable F 1 -ATPase activity. The primary mutations in atp1-1 and atp1-2 were identified as Thr 383 3 Ile and Gly 291 3 Asp, respectively. From recent structural data, position 383 lies within the catalytic site. Position 291 is located near the region affecting subunit-subunit interaction with the F 1 -subunit. An unlinked suppressor gene, ASC1 (␣-subunit complementing) of the atp1-2 mutation (Gly 291 3 Asp) restored the growth defect phenotype on glycerol, but did not suppress either atp1-1 or the deletion mutant ⌬atp1. Sequence analysis revealed that ASC1 was allelic with RAS2, a G-protein growth regulator. The introduction of ASC1/RAS2 into the atp1-2 mutant increased the F 1 -ATPase enzyme activity in this mutant when the transformant was grown on glycerol. The possible mechanisms of ASC1/RAS2 suppression of atp1-2 are discussed; we suggest that RAS2 is part of the regulatory circuit involved in the control of F 1 -ATPase subunit levels in mitochondria.Mitochondrial ATP synthase functions as a key enzyme for ATP production in eukaryotic cells (1). The enzyme is controlled in response to the energy demands of the cell (2). Although considerable attention has been given to the central role of mitochondrial ATP production in the initiation of programmed cell death (apoptosis), little is known about the regulation of ATP synthase during its biogenesis and energy transduction or its links to growth regulatory pathways (3).The enzyme complex is composed of the F 1 -ATPase (catalytic sector) and the transmembrane F 0 proton channel (embedded in inner membrane) (4 -6). Both F 1 and F 0 are necessary for ATP synthase activity, whereas F 1 alone retains the ability to hydrolyze ATP (F 1 -ATPase) (7). The F 1 -ATPase consists of five different subunits: ␣, , ␥, ␦, and ⑀. The minimum unit for F 1 -ATPase activity resides on ␣--subunit dimer (8). The catalytic center is considered to be in the -subunit (9, 10), and the ␣-subunit has been reported to play a role in the formation of the catalytic site with it (11). The ␣-subunit also assists the assembly of other subunits of the F 1 -ATPase (12) by acting as a chaperone to assist assembly (13). In yeast, all but three F 0 subunits of the enzyme are encoded on nuclear DNA. In order to examine the control mechanism(s) of the F 1 ␣-subunit in the complex assembly and function, we characterized several mutants (14) and isolated extragenic suppressors of mutations in the ATP1 gene. One extragenic suppressor for the point mutant, atp1-2, was RAS2, a well kno...