Subunit A and B proteins of DNA gyrase were separately purified from fluoroquinolone-resistant Escherichia coli GN14181 (MIC of ofloxacin, 100 gLg/ml) and susceptible strain KL-16. The supercoiling activities of reconstituted Ar+Br (r, resistant) and Ar+Bs (s, susceptible) were 250-fold more resistant to new fluoroquinolones thsn those of As+Bs and As+Br.DNA gyrase was discovered by Geilert et al. (8) as an activity in Escherichia coli that catalyzes the ATP-coupled negative supercoiling of DNA. In addition to supercoiling activity, the enzyme causes the relaxation of supercoiling DNA in the absence of ATP, and the binding of the enzyme to DNA leads to double-strand breakage at specific sites promoted by quinolones and sodium dodecyl sulfate (4,5,10,17,20). The enzyme activities result from breakage and rejoining of both strands of duplex DNA (3,5). The active gyrase holoenzyme is a tetramer composed of two subunits, A2 and B2 (10, 15). It is believed that subunit A protein is the target of quinolones because nalidixic acid-resistant gyrA mutants are also resistant to quinolones (11,12). New fluoroquinolones, such as ofloxacin, norfloxacin, ciprofloxacin, and enoxacin, have broad spectra against gramnegative and -positive bacteria (13,14,16,19), and they strongly inhibit the supercoiling activity of DNA gyrase from E. coli . However, there have been no reports on the inhibitory properties of DNA gyrase from clinical isolates.In this report, we present the purification and properties of subunit A and B proteins of DNA gyrase from a fluoroquinolone-resistant isolate, E. coli GN14181.E. coli GN14181 was isolated from an upper urinary tract infection and identified by the method ofBergey's Manual of Systematic Bacteriology (3). E. coli K-12 strains KL-16 (Hfr, thi, relA) and MH-5, its gyrAr derivative, were also used (2, 9).We received the following compounds as gifts from their manufacturers: ofloxacin (OFX), norfloxacin (NFX), ciprofloxacin (CPX), enoxacin (ENX), pipemidic acid, and nalidixic acid (NA). Novobiocin (NB) and coumermycin Al (COU) were purchased from Sigma Chemical Co. purified by using a heparin-Sepharose CL-6B (Pharmacia Fine Chemicals) column. Active fractions, which eluted around 0.3 M NaCl, were pooled after dialysis against TGED buffer. The B subunit was eluted with 5 M urea from an NB-Sepharose column.The assay of supercoiling activity was modified from previous reports (6, 7). One unit of enzyme activity was defined as the amount that brought 50% of relaxed pBR322 to the supercoiled position in agarose gel electrophoresis as described by Gellert et al. (8). The reaction mixture containing subunit A and B proteins (each, 0.1 ,ug of protein), drug solution, and pBR322 relaxed by topoisomerase I (Bethesda Research Laboratories, Inc.) was incubated at 37°C for 1 h, and the reaction was stopped by the addition of proteinase K (20 ,ug/ml). The mixtures were subjected to 0.8% agarose gel electrophoresis. The gel was stained with ethidium bromide (0.5 ,ug/ml) and photographed by using UV light. The ne...