Threonine synthase catalyzes the final step of threonine biosynthesis, the pyridoxal 5-phosphate (PLP)-dependent conversion of O-phosphohomoserine into threonine and inorganic phosphate. Threonine is an essential nutrient for mammals, and its biosynthetic machinery is restricted to bacteria, plants, and fungi; therefore, threonine synthase represents an interesting pharmaceutical target. The crystal structure of threonine synthase from Saccharomyces cerevisiae has been solved at 2.7 Å resolution using multiwavelength anomalous diffraction. The structure reveals a monomer as active unit, which is subdivided into three distinct domains: a small N-terminal domain, a PLP-binding domain that covalently anchors the cofactor and a so-called large domain, which contains the main of the protein body. All three domains show the typical open ␣/ architecture. The cofactor is bound at the interface of all three domains, buried deeply within a wide canyon that penetrates the whole molecule. Based on structural alignments with related enzymes, an enzyme-substrate complex was modeled into the active site of yeast threonine synthase, which revealed essentials for substrate binding and catalysis. Furthermore, the comparison with related enzymes of the -family of PLP-dependent enzymes indicated structural determinants of the oligomeric state and thus rationalized for the first time how a PLP enzyme acts in monomeric form.Threonine synthase (TS, EC 4.2.99.2) 1 is a pyridoxal 5Ј-phosphate (PLP)-dependent enzyme that catalyzes the ultimate step in threonine biosynthesis, the PLP-dependent ,␥-replacement reaction (Reaction 1) of O-phosphohomoserine (OPHS) yielding threonine and inorganic phosphate (1-3).Together with tryptophan synthase (TRPS), threonine deaminase (TDA), O-acetylserine sulfhydrylase (OASS), cystathione -synthase (CBS), and 1-aminocyclopropane-1-carboxylate deaminase (ACCD), TS constitutes the core of the fold-type II family of PLP enzymes (4, 5) (also referred to as -family (6)). Detailed amino acid sequence alignments revealed that TS can be grouped into a plant and a fungal subfamily (7). The former one (class I subfamily) comprises TS from higher plants, cyanobacteria, archaebacteria, and the eubacterial groups of Mycobacteria, Aquificaceae, and Bacillus species. The second subfamily (class II subfamily) contains the enzymes from fungi and from the eubacterial groups of Proteobacteria and corneyform bacteria. Only 5 from ϳ500 residues are invariant between both subfamilies, including the PLP-binding lysine as part of a phenylalanine-lysine-aspartate consensus sequence.During the last decades, TS was purified and characterized from several bacteria and fungi (8 -12) and from Arabidopsis thaliana (7, 13). In plants, the substrate of TS, OPHS, is the branching point for threonine and methionine biosynthesis. Flux coordination between both synthetic pathways is accomplished by allosteric activation of plant threonine synthase. The allosteric effector is S-adenosyl methionine (SAM) (14, 15), a product of methioni...