Rapid and recent diversification patterns in Anseriformes birds: Inferred from molecular phylogeny and diversification analyses

Sun, Zhonglou; Pan, Tao; Hu, Chaochao; Sun, Lu; Ding, Hengwu; Wang, Hui; Zhang, Chenling; Hong, Jiman; Chang, Qing; Kan, Xianzhao; Zhang, Baowei

doi:10.1371/journal.pone.0184529

Cited by 74 publications

(78 citation statements)

References 135 publications

(130 reference statements)

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“…For both metrics, a distance of 0 indicates complete congruence and 1, incomplete congruence. The phylogenetic relationships among the avian host species were inferred using a maximum likelihood tree of the cytochrome B mitochondrial sequences and accords with those determined previously (41-44). The overall co-phylogenetic analysis was visualized using the phytools package (45).…”

Section: Methodsmentioning

confidence: 87%

Virome heterogeneity and connectivity in waterfowl and shorebird communities

Wille

Shī

Klaassen

et al. 2019

Preprint

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20Models of host-microbe dynamics typically assume a single-host population infected by a single 21 pathogen. In reality, many hosts form multi-species aggregations and may be infected with an 22 assemblage of pathogens. We used a meta-transcriptomic approach to characterize the viromes of 23 nine avian species in the Anseriformes (ducks) and Charadriiformes (shorebirds). This revealed the 24 presence of 27 viral species, of which 24 were novel, including double-stranded RNA viruses 25 (Picobirnaviridae and Reoviridae), single-stranded RNA viruses (Astroviridae, Caliciviridae, 26

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Section: Methodsmentioning

confidence: 87%

Virome heterogeneity and connectivity in waterfowl and shorebird communities

Wille

Shī

Klaassen

et al. 2019

Preprint

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“…For both metrics, a distance of 0 indicates complete congruence and 1, incomplete congruence. The phylogenetic relationships among the avian host species were inferred using a maximum likelihood tree of the cytochrome B mitochondrial sequences and accords with those determined previously [42][43][44][45]. The overall co-phylogenetic analysis was visualized using the phytools package [46].…”

Section: Diversity and Abundance Across Librariesmentioning

confidence: 99%

Virome heterogeneity and connectivity in waterfowl and shorebird communities

et al. 2019

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Models of host-microbe dynamics typically assume a single-host population infected by a single pathogen. In reality, many hosts form multi-species aggregations and may be infected with an assemblage of pathogens. We used a meta-transcriptomic approach to characterize the viromes of nine avian species in the Anseriformes (ducks) and Charadriiformes (shorebirds). This revealed the presence of 27 viral species, of which 24 were novel, including double-stranded RNA viruses (Picobirnaviridae and Reoviridae), single-stranded RNA viruses (Astroviridae, Caliciviridae, Picornaviridae), a retro-transcribing DNA virus (Hepadnaviridae), and a single-stranded DNA virus (Parvoviridae). These viruses comprise multi-host generalist viruses and those that are host-specific, indicative of both virome connectivity (host sharing) and heterogeneity (host specificity). Virome connectivity was apparent in two well described multi-host virus species -avian coronavirus and influenza A virus- and a novel Rotavirus species that were shared among some Anseriform species, while virome heterogeneity was reflected in the absence of viruses shared between Anseriformes and Charadriiformes, as well as differences in viral abundance and alpha diversity among species. Overall, we demonstrate complex virome structures across host species that co-exist in multi-species aggregations.

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“…This tree is also similar to molecular trees for Anatidae in that Tadornini forms a clade with Anatini, Aythyini, Mergini and Aix (Sun et al . ). However, the relative position of various clades is different in the osteologically based phylogenies which are based on dataset of Worthy (), and molecular phylogenies (e.g.…”

Section: Phylogenetic Resultsmentioning

confidence: 97%

“…; Sun et al . ). These differences generally concern interrelationships of Anserinae and Dendrocygninae, as well as the position of Mergini and Aythyini relative to Anas s.l .…”

Section: Phylogenetic Resultsmentioning

confidence: 97%

The middle Miocene duck Chenoanas (Aves, Anatidae): new species, phylogeny and geographical range

Зеленков

Stidham

Martynovich³

et al. 2018

Papers in Palaeontology

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A notable reorganization of the waterfowl communities apparently took place across Eurasia during the middle to early late Miocene, when primitive and extinct anatid taxa (e.g. Mionetta) were replaced by more derived forms, including extant genera. However, little is known about the diversity of Eurasian waterfowl and their palaeobiogeography during this critical interval. In particular, larger ducks of the middle Miocene are represented by poorly known taxa including ‘Anas’ sansaniensis from western and central Europe and Chenoanas deserti from Western Mongolia. We report new geographically widespread specimens referred to Chenoanas from Mongolia, eastern Siberia, and China that include a new species, Chenoanas asiatica sp. nov., and allow for recognition of the European ‘Anas’ sansaniensis as a member of Chenoanas. We describe the oldest remains of Chenoanas sansaniensis from eastern Siberia, which supports a westward dispersal or range expansion of this group of ducks during the Miocene, comparable to the previously established biogeographical affinities of many Eurasian mammals. These data also support a growing body of evidence that avian faunas of Siberia were similar to European ones during the Middle Miocene Climatic Optimum. Our data indicate a wide Eurasian distribution (more than 8000 km) and a greater diversity within the genus Chenoanas during the late early to middle Miocene. The phylogenetic analysis of Chenoanas suggests that it may be a primitive member of Anatini, and thus does not belong to the basal radiation of extinct relatives of stiff‐tailed ducks (Oxyura and its relatives). Species of Chenoanas were probably not specialized divers.

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Rapid and recent diversification patterns in Anseriformes birds: Inferred from molecular phylogeny and diversification analyses

Cited by 74 publications

References 135 publications

Virome heterogeneity and connectivity in waterfowl and shorebird communities

Virome heterogeneity and connectivity in waterfowl and shorebird communities

Virome heterogeneity and connectivity in waterfowl and shorebird communities

The middle Miocene duck Chenoanas (Aves, Anatidae): new species, phylogeny and geographical range

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