There is limited variability within rapeseed germplasm in Morocco. Induced mutation was recently used to generate novel genetic variability and develop mutant lines combining desirable traits. In this context, nine rapeseed promising advanced M2 mutants lines and the wild-type variety 'INRA-CZH2' were evaluated for their seed oil content, fatty acid composition, total phenolics content (TPC), and free radical scavenging activity (FRSA) determined by 2,2-diphenyl-1picrylhydrazyl (DPPH) and 3-ethylbenzothiazoline-6-sulfonic acid (ABTS) methods. The results showed significant variability, among all mutants, in seed oil content (from 38.14 to 42.04%) and in fatty acids (SAFA = 5.49 -10.99%, MUFA = 50.33% -71.62%, PUFA = 22.89% -38.68%). The mutant H2M-5 exhibited the highest fraction of MUFA and lowest proportion of SAFA and PUFA, while the mutant H2M-4 showed the highest SAFA and PUFA amounts and lowest MUFA level. TPC varied from 2.16 to 4.35 mg GAE/100 g. The highest amount was found in the mutant H2M-1, which is about twice, compared to all other mutants and the wild-type variety. Free radical scavenging activity (FRSA) differed significantly among samples and the variations observed for DPPH and ABTS methods were 40.5-59.28% and 40.31-59.86%, respectively. FRSA was positively correlated to TPC in sampled oils (r = 0.801 and 0.802, p < 0.01). This is the first report emphasizing biochemical potentialities of rapeseed varieties and novel mutants in Morocco. H2M-1, H2M-4 and H2M-5 were proposed for rapeseed national breeding program as they showed higher levels in some biochemical traits of interest.