The long non-coding RNA GUARDIN functions to protect genome stability. Inhibiting GUARDIN expression can alter cell fate decisions towards senescence or apoptosis, but the underlying molecular signals are unknown. Here we show that GUARDIN is an essential component of a transcriptional repressor complex involving LRP130 and PGC1ɑ which suppresses FOXO4 expression. GUARDIN acts as a scaffold to stabilize LRP130/PGC1ɑ heterodimers and their occupancy at the FOXO4 promotor. Destabilizing this complex by silencing of GUARDIN, LRP130 or PGC1ɑ leads to FOXO4dependent upregulation of p21, thereby driving cells into senescence. We also found that GUARDIN expression was induced by rapamycin, a senolytic agent that suppresses cell senescence. FOS-Like Antigen 2 (FOSL2) acts as a transcriptional repressor of GUARDIN with increased levels in the presence of rapamycin resulting from downregulation of FOSL2. Together, these results demonstrate that GUARDIN inhibits p21-dependent senescence through a LRP130-PGC1ɑ-FOXO4 signaling axis and moreover, GUARDIN contributes to the anti-senolytic activities of rapamycin.using the ULYSIS Nucleic Acid Labeling Kit (Thermo Fisher (42). Nuclei were counterstained with Hoechst.
ELISACells were incubated in serum-free DMEM for 24 h and IL-6/8 levels determined in supernatants using the femtoELISA™ HRP Kit (G-Biosciences).
Western BlottingWhole cell lysates were prepared using RIPA buffer containing protease inhibitors (Beyotime) before conducting SDS-PAGE and Western blotting using enhanced chemiluminescence.
Northern BlottingNorthern blots were performed as described previously (41) against total RNA resolved on 1.5% agarose gels. Membranes were hybridized with digoxigenin-labeled antisense GUARDIN probes synthesized using T7 RNA polymerase using the DIG Northern Starter Kit (Roche).
Biotin pull-down assays and mass spectrometryBiotinylated sense (negative control) and antisense biotin-labeled DNA oligomers corresponding to GUARDIN (1µg) were coupled to streptavidin-coupled Dynabeads (Invitrogen). The Dynabeads were subsequently incubated with cell lysates for 4 h and eluted proteins subjected to SDS-PAGE and staining with Coomassie Brilliant Blue G-250. Protein bands were excised and sent to Core Facility of Center for Life Sciences, USTC for mass spectrometry (MS) analysis using a Thermo-Finnigan LTQ LC/MS-MS. Proteins IDs determined by MS are listed in Dataset EV2. All processes were performed under RNase-free conditions.
ImmunoprecipitationCells were lysed in IP lysis buffer (150 mM NaCl, 50 mM Tris, pH 7.4, 10% glycerol and 1.5 mM MgCl 2 ) supplemented with protease inhibitor cocktail before incubation for 4 h at 4°C with protein A/G beads precoated with indicated antibodies. Beads were washed three times using IP lysis buffer, eluted with heat (95°C, 10 min) and the samples analyzed by Western blotting. Where indicated, two step IPs were performed against cell lysates prepared using lysis buffer containing 20 mM HEPES, pH 7.8, 400 mM KCl, 5% glycerol, 5 mM EDTA, 1% NP40, protease inhi...