To study the role of early traditional Chinese medicine bundle therapy on the prevention of sepsis-associated acute gastrointestinal injury (AGI). This was a multicenter, prospective cohort study of 296 consecutive patients with severe sepsis between 2013/3 and 2014/11; 150 patients received standard treatments (controls) and 146 received traditional Chinese medicine bundle therapy (intervention group) (herbal decoction gavage based on syndrome differentiation, acupuncture, application of mirabilite, and defecation mixture). D-lactic acid, diamine oxidase, endotoxin, gastrin, and intra-abdominal pressure were measured. AGI was classified into four levels. Compared with controls, D-lactic acid, diamine oxidase, endotoxin, gastrin, and intra-abdominal pressure in the intervention group were decreased and motilin was increased on day 7 (P<0.05). AGI incidence in the intervention group was lower than in controls (P<0.05). GIF scores of the intervention AGI II and III groups were lower than in controls (P<0.05). The APACHE II scores of intervention AGI II, III, and IV groups were lower than in controls (P<0.05). Compared with controls, mechanical ventilation time and ICU stay in the intervention group were shorter ( P=0.011 and P=0.035); and 28-day overall and AGI-attributed mortality were lower (P=0.048 and P=0.043). For patients with severe sepsis, early traditional Chinese medicine bundle therapy could decrease AGI incidence and improve prognosis.