AimThe study aimed to estimate the cost‐effectiveness of CYP2C19 genotype‐guided antiplatelet therapy, cilostazol, and ticagrelor as an alternative to clopidogrel.MethodsA 90‐day decision tree and 30‐year Markov model were employed to assess the costs and quality‐adjusted life years (QALYs) of personalized antiplatelet therapy for patients with minor ischemic stroke and high‐risk transient ischemic attack, compared to the conventional antiplatelet therapy in the Chinese healthcare system. The primary outcome was the incremental cost‐effectiveness ratio (ICER). The data sources included clinical trials, published literature, official documents, and local prices. One‐way sensitivity analysis and probabilistic sensitivity analysis were performed to confirm the robustness of the findings.ResultsThe base‐case analysis indicated that the CYP2C19 genotype‐guided antiplatelet strategy, cilostazol group and ticagrelor group, yielding an ICER of 3327.40 US dollars (USD)/QALY and 3426.92 USD/QALY, respectively, which were less than threshold. The one‐way sensitivity analysis presented the results were robust, where the most sensitive parameter was the disability distribution in the modified Rankin Scale 3‐5. The probabilistic analysis showed that the CYP2C19 genotype‐guided antiplatelet therapy either with cilostazol or with ticagrelor was 100% cost‐effective under the willingness‐to‐pay threshold.ConclusionCYP2C19 genotype‐guided antiplatelet therapy, cilostazol, and ticagrelor as an alternative to clopidogrel, appeared to be more cost‐effective than conventional antiplatelet therapy for acute minor ischemic stroke and high‐risk transient ischemic attack patients over 30 years in China.