Previous studies have found that intraepithelial lymphocytes (IEL) contain virus-specific cytotoxic T lymphocytes (CTL) that increase dramatically during the course of virus infection. In the present study, the T-cell receptor (TCR) V pattern used by IEL against reovirus enteric infection was investigated both in conventional and in germfree mice. IEL were isolated by a modified rapid method, and their expression of 13 TCR Vs was examined by flow cytometric analysis. The virus-specific CTL activity of each TCR V subset was assessed by subtraction with coated Dyna beads by a nonradioactive assay. There was a preferential perturbation of TCR Vs following virus challenge, including increases in cells expressing V7,-12,-14, and-17 in conventional mice and V2,-12, and-17 in germfree mice. In conventionally reared mice, IEL maintained and restimulated in culture had a preferential use of TCR V9,-12, and-17. TCR V12 and-17 subfamilies were found amplified in all conditions. Furthermore, TCR V12 and-17 accounted for 37 and 77% of the virus-specific CTL activity, respectively, after in vitro restimulation. This study provides evidence that virus-specific CTL activity may be due to the oligoclonal expansion of TCR V subfamilies in IEL. Our findings suggest that in vivo infection selectively presents few T-cell epitopes and that the correct identification of these T-cell epitopes would increase the likelihood of success when designing subunit vaccines.